RetrogeneDB ID: | retro_mmul_1725 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:133598660..133599337(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAD23B | ||
Ensembl ID: | ENSMMUG00000014944 | ||
Aliases: | None | ||
Description: | UV excision repair protein RAD23 homolog B [Source:RefSeq peptide;Acc:NP_001248717] |
Percent Identity: | 65.24 % |
Parental protein coverage: | 55.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MVTKPKA-VSTPAPATTQQSAPASTTA-ITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPA |
MV.KPK..V..P.PAT.QQS.PA.T.....SSTA..VAQA.T...ALAPTSTPASI.P...T...E..P. | |
Retrocopy | MVIKPKE<VTIPVPATMQQSNPATTMK<VSSSTAAAVAQAATLISALAPTSTPASIIPPT-TPCPEHVPS |
Parental | SATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAA |
SA.KQ.KPAEK.AE.PVATS.T.T.S...DSS..NL.E.A..ALV..QSYENMVTEIMSMGY..EQ.I.. | |
Retrocopy | SAMKQDKPAEKSAEIPVATSSTLTESRAVDSSLPNLVEVA-NALVKSQSYENMVTEIMSMGYKQEQEIVS |
Parental | LRASFNNPDRAVEYLLMGIPGDRESQAVVD---PP-QAASTGAPQSSAVAAAAATTTATTTTTSSGGHPL |
LRA.FNNPDRAV.YLL.GIPG.R.SQAVV....PP.Q...T..PQSSAV..AAAT.TA..TTTSSG.HP. | |
Retrocopy | LRAVFNNPDRAVQYLLIGIPGGRKSQAVVEHLPPP>QSGTTRTPQSSAVSSAAATMTA--TTTSSGEHPH |
Parental | EFLRNQPQFQQMRQIIQQNPSLL |
E.L.NQPQF.QMRQI.Q..PSLL | |
Retrocopy | EIL*NQPQF*QMRQITQ*SPSLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 126 .62 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 106 .78 RPM |
SRP007412_cerebellum | 0 .00 RPM | 119 .66 RPM |
SRP007412_heart | 0 .00 RPM | 88 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 83 .68 RPM |
SRP007412_liver | 0 .00 RPM | 74 .93 RPM |
SRP007412_testis | 0 .00 RPM | 78 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3754 |
Pongo abelii | retro_pabe_3162 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001926 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016908 | 2 retrocopies | |
Equus caballus | ENSECAG00000021928 | 1 retrocopy | |
Homo sapiens | ENSG00000119318 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002511 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014944 | 2 retrocopies |
retro_mmul_1476, retro_mmul_1725 ,
|
Nomascus leucogenys | ENSNLEG00000017319 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007316 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014216 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019477 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021229 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011925 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000005436 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007597 | 1 retrocopy |