RetrogeneDB ID: | retro_pabe_3757 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:51454150..51454624(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000005546 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.1 % |
Parental protein coverage: | 73.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPK |
..SYA.FVQT..EE.KK.HPDASVNFSEF.KKCSERWKT.SAK.K.KFED....D.A.YERE.K.YIPPK | |
Retrocopy | ITSYAIFVQTSWEEYKKQHPDASVNFSEFPKKCSERWKTLSAKKKRKFEDSVRVDMAHYEREIKIYIPPK |
Parental | GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLK |
.ETK.KFKDPNAPK.PP.AFF.F.SE..PKIK.EHPGLSI.D.AKKLGEMWN.TA.DDK.PYEKKA.KLK | |
Retrocopy | AETKMKFKDPNAPKSPPLAFFMFSSEDCPKIK-EHPGLSISDIAKKLGEMWNYTAEDDKHPYEKKAVKLK |
Parental | EKYEKDIAAYRAKGKPDAA |
EK.EKDIAA...KGKPDAA | |
Retrocopy | EKHEKDIAAFGGKGKPDAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 108 .09 RPM |
SRP007412_cerebellum | 0 .00 RPM | 110 .54 RPM |
SRP007412_heart | 0 .00 RPM | 71 .83 RPM |
SRP007412_kidney | 0 .00 RPM | 98 .31 RPM |
SRP007412_liver | 0 .00 RPM | 70 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4832 |
Gorilla gorilla | retro_ggor_3013 |