RetrogeneDB ID: | retro_pabe_784 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:83297446..83297827(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSPPYG00000020818 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 67.94 % |
Parental protein coverage: | 65.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
..K.DPKKPKG......FFVQ.CREEH.KKNPEVPVNFA.FSK.CSE...TMS..EKSKFD..AK.DKV. | |
Retrocopy | LPKSDPKKPKGLLNT--FFVQMCREEHNKKNPEVPVNFAKFSKQCSEKRQTMSRREKSKFDKVAKVDKVL |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMW |
...EMKDY..AKGG..KKD.NA.KRPPSGFF.F.SE..PKIKSTNPGISIGDV.......W | |
Retrocopy | RVWEMKDYRSAKGG--KKDSNALKRPPSGFFQFFSEVYPKIKSTNPGISIGDVXXXXWVKW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 17 .91 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .19 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .02 RPM |
SRP007412_liver | 0 .00 RPM | 78 .59 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_909 |
Pan troglodytes | retro_ptro_629 |
Macaca mulatta | retro_mmul_1115 |