RetrogeneDB ID:

retro_ggor_259

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:1:82541001..82541555(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000189403
Ensembl ID:ENSGGOG00000026764
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_259
ATGGGCCATGGAGATCCTGTGAAGCCGAGAGGCAAAATGTCATCATGTGTATTTTTTTGTGCAAAACTGTCAGGAGGAGC
ACAAGAAACGGTATCCAGATACTTCTGTCACCTTCTCACAGTTTTCTAAGAAGTGCTTAGAGAGGTGGAAGACCATGTGT
GTTGAAGAGAAGGGAAAATCTGAAGACACTGCAAAAGCTGGCAAGCCTTGTTATGATAGAGAAATGAAAACCTATATCCC
TCCTAAAGGGGAAACAAAATGAAGTTCAAGGATCCCAATCCACCCCAGAGGCCTCCTTCTGGCTTTTTTGGTTCTAGTCT
GAGTAGTGTTCAAAAATCAAAGGAGAACATTCTGGCCTATCCATTGATGATGTTTCAAAGAAATGGGAACATGTGGAATA
ACTGCTGCAGATGACAAGCAGTCTTATGAAAAAAGAGGCTGCAAATCTGAAGGAAAAATACAAAAAAGATATTGCTGCAT
ACAGAACTAAAGGAAAGGCTGACGTAGCAAAAAAGGGAATTGTCAAGGCTGAAAAAGCAAGAAAAAGAAGGAAG

ORF - retro_ggor_259 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.11 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalMGKGDPKKPRGKMSSYAFF-VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA
MG.GDP.KPRGKMSS..FF.VQ.C.EEHKK..PD.SV.FS.FSKKC.ERWKTM...EKGK.ED.AKA.K.
RetrocopyMGHGDPVKPRGKMSSCVFF>VQNCQEEHKKRYPDTSVTFSQFSKKCLERWKTMCVEEKGKSEDTAKAGKP
ParentalRYEREMKTYIPPKGETK-KKFKDPNAPKRPPSAF-FLFCSEYRPKIKGEHPGLSIGDVAKK-LGEMWNNT
.Y.REMKTYIPPKGETK..KFKDPN.P.RPPS.F.F.F.SE...KIKGEH.GLSI.DV.KK..G......
RetrocopyCYDREMKTYIPPKGETK<MKFKDPNPPQRPPSGF<FWF*SE*CSKIKGEHSGLSIDDVSKK<MGTCGITA
ParentalAADDKQPYEKK-AAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKMKKKKK
A.D.KQ.YEK..AA.LKEKY.KDIAAYR.KGK.D.AKKG.VKAEK..K..K
RetrocopyADD-KQSYEKR>AANLKEKYKKDIAAYRTKGKADVAKKGIVKAEKARKRRK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 81 .28 RPM
SRP007412_cerebellum 0 .00 RPM 86 .36 RPM
SRP007412_heart 0 .00 RPM 25 .92 RPM
SRP007412_kidney 0 .00 RPM 101 .90 RPM
SRP007412_liver 0 .00 RPM 77 .37 RPM
SRP007412_testis 0 .00 RPM 95 .21 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_259 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_259 has 4 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_176
Pongo abelii retro_pabe_452
Macaca mulatta retro_mmul_385
Callithrix jacchus retro_cjac_2934

Parental genes homology:
Parental genes homology involve 36 parental genes, and 593 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000088807 retrocopies
Bos taurus ENSBTAG000000181032 retrocopies
Canis familiaris ENSCAFG0000000659713 retrocopies
Choloepus hoffmanni ENSCHOG0000000242316 retrocopies
Callithrix jacchus ENSCJAG0000002161511 retrocopies
Cavia porcellus ENSCPOG000000039851 retrocopy
Equus caballus ENSECAG000000084392 retrocopies
Echinops telfairi ENSETEG0000000404818 retrocopies
Felis catus ENSFCAG0000000020010 retrocopies
Homo sapiens ENSG0000018940337 retrocopies
Gorilla gorilla ENSGGOG000000158821 retrocopy
Gorilla gorilla ENSGGOG00000026764 23 retrocopies
Gorilla gorilla ENSGGOG0000002716416 retrocopies
Loxodonta africana ENSLAFG000000002694 retrocopies
Macropus eugenii ENSMEUG000000013802 retrocopies
Microcebus murinus ENSMICG000000005731 retrocopy
Microcebus murinus ENSMICG000000071447 retrocopies
Myotis lucifugus ENSMLUG0000002597917 retrocopies
Macaca mulatta ENSMMUG000000233993 retrocopies
Monodelphis domestica ENSMODG0000000923814 retrocopies
Mus musculus ENSMUSG00000066551129 retrocopies
retro_mmus_1025, retro_mmus_1037, retro_mmus_1047, retro_mmus_1065, retro_mmus_1094, retro_mmus_1112, retro_mmus_1113, retro_mmus_1114, retro_mmus_1115, retro_mmus_1128, retro_mmus_1135, retro_mmus_1140, retro_mmus_1178, retro_mmus_1181, retro_mmus_1209, retro_mmus_1284, retro_mmus_1302, retro_mmus_1351, retro_mmus_1407, retro_mmus_1423, retro_mmus_1508, retro_mmus_1553, retro_mmus_1554, retro_mmus_1584, retro_mmus_1672, retro_mmus_1705, retro_mmus_1706, retro_mmus_1712, retro_mmus_1716, retro_mmus_1725, retro_mmus_1775, retro_mmus_1794, retro_mmus_1800, retro_mmus_1822, retro_mmus_1845, retro_mmus_1871, retro_mmus_1989, retro_mmus_2015, retro_mmus_2077, retro_mmus_2080, retro_mmus_2096, retro_mmus_2191, retro_mmus_2194, retro_mmus_2199, retro_mmus_2209, retro_mmus_2224, retro_mmus_2229, retro_mmus_2280, retro_mmus_2300, retro_mmus_2324, retro_mmus_2404, retro_mmus_2407, retro_mmus_2409, retro_mmus_2414, retro_mmus_2420, retro_mmus_2425, retro_mmus_2467, retro_mmus_2469, retro_mmus_2524, retro_mmus_2532, retro_mmus_2627, retro_mmus_2670, retro_mmus_2682, retro_mmus_2702, retro_mmus_2719, retro_mmus_2754, retro_mmus_2789, retro_mmus_2815, retro_mmus_2823, retro_mmus_2866, retro_mmus_2877, retro_mmus_2886, retro_mmus_292, retro_mmus_2923, retro_mmus_2936, retro_mmus_2940, retro_mmus_2954, retro_mmus_2965, retro_mmus_2977, retro_mmus_303, retro_mmus_3046, retro_mmus_3056, retro_mmus_3059, retro_mmus_3067, retro_mmus_3070, retro_mmus_3075, retro_mmus_3102, retro_mmus_3106, retro_mmus_3121, retro_mmus_3169, retro_mmus_3175, retro_mmus_319, retro_mmus_3190, retro_mmus_3199, retro_mmus_3207, retro_mmus_3239, retro_mmus_3289, retro_mmus_3322, retro_mmus_3353, retro_mmus_3375, retro_mmus_3476, retro_mmus_3494, retro_mmus_3533, retro_mmus_359, retro_mmus_3612, retro_mmus_3676, retro_mmus_3692, retro_mmus_3715, retro_mmus_418, retro_mmus_515, retro_mmus_530, retro_mmus_574, retro_mmus_599, retro_mmus_618, retro_mmus_623, retro_mmus_624, retro_mmus_634, retro_mmus_704, retro_mmus_705, retro_mmus_785, retro_mmus_813, retro_mmus_839, retro_mmus_855, retro_mmus_881, retro_mmus_903, retro_mmus_906, retro_mmus_930, retro_mmus_965, retro_mmus_981,
Nomascus leucogenys ENSNLEG0000000072033 retrocopies
Oryctolagus cuniculus ENSOCUG0000002133516 retrocopies
Otolemur garnettii ENSOGAG00000003205104 retrocopies
retro_ogar_1008, retro_ogar_1043, retro_ogar_106, retro_ogar_1133, retro_ogar_123, retro_ogar_1232, retro_ogar_1296, retro_ogar_1299, retro_ogar_1330, retro_ogar_1386, retro_ogar_1398, retro_ogar_1399, retro_ogar_1421, retro_ogar_1423, retro_ogar_1424, retro_ogar_1431, retro_ogar_1461, retro_ogar_1560, retro_ogar_1571, retro_ogar_1585, retro_ogar_1597, retro_ogar_1600, retro_ogar_1607, retro_ogar_1628, retro_ogar_163, retro_ogar_1664, retro_ogar_1698, retro_ogar_17, retro_ogar_172, retro_ogar_1738, retro_ogar_1758, retro_ogar_1781, retro_ogar_1843, retro_ogar_1844, retro_ogar_1861, retro_ogar_1867, retro_ogar_1878, retro_ogar_1894, retro_ogar_1896, retro_ogar_198, retro_ogar_1991, retro_ogar_2136, retro_ogar_2165, retro_ogar_219, retro_ogar_2282, retro_ogar_2318, retro_ogar_2319, retro_ogar_2352, retro_ogar_2385, retro_ogar_2403, retro_ogar_2429, retro_ogar_2436, retro_ogar_2458, retro_ogar_250, retro_ogar_2559, retro_ogar_2598, retro_ogar_2615, retro_ogar_2618, retro_ogar_2730, retro_ogar_2777, retro_ogar_2778, retro_ogar_2814, retro_ogar_2824, retro_ogar_2836, retro_ogar_284, retro_ogar_2845, retro_ogar_2891, retro_ogar_2894, retro_ogar_2906, retro_ogar_2961, retro_ogar_3008, retro_ogar_3018, retro_ogar_3028, retro_ogar_304, retro_ogar_311, retro_ogar_3136, retro_ogar_317, retro_ogar_320, retro_ogar_3208, retro_ogar_3230, retro_ogar_3325, retro_ogar_3330, retro_ogar_3355, retro_ogar_3374, retro_ogar_3500, retro_ogar_422, retro_ogar_435, retro_ogar_511, retro_ogar_542, retro_ogar_547, retro_ogar_634, retro_ogar_663, retro_ogar_698, retro_ogar_716, retro_ogar_772, retro_ogar_778, retro_ogar_8, retro_ogar_835, retro_ogar_890, retro_ogar_904, retro_ogar_912, retro_ogar_918, retro_ogar_92, retro_ogar_933,
Otolemur garnettii ENSOGAG000000321471 retrocopy
Ochotona princeps ENSOPRG000000035078 retrocopies
Procavia capensis ENSPCAG000000022012 retrocopies
Pongo abelii ENSPPYG0000000554635 retrocopies
Pteropus vampyrus ENSPVAG000000014316 retrocopies
Rattus norvegicus ENSRNOG000000298131 retrocopy
Sorex araneus ENSSARG0000000447014 retrocopies
Sarcophilus harrisii ENSSHAG000000140342 retrocopies
Sus scrofa ENSSSCG000000093273 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000000044319 retrocopies
Tarsius syrichta ENSTSYG000000063287 retrocopies
Tursiops truncatus ENSTTRG000000103278 retrocopies



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