RetrogeneDB ID: | retro_pcap_268 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_24468:1261..1604(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFS4 | ||
Ensembl ID: | ENSPCAG00000013496 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:7711] |
Percent Identity: | 71.55 % |
Parental protein coverage: | 65.71 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFST |
ITTLTGVPEE..KTR.VR.FVPA.NNM.SGVNNTKKWK.E.D.RE.WENP.MG.AS.ADPLSN..LT.ST | |
Retrocopy | ITTLTGVPEEGTKTRPVRMFVPAHNNMRSGVNNTKKWKAESDSRE*WENPVMG*ASMADPLSNTLLT-ST |
Parental | KEDAVAFAE-KNGWNYDVEDRKVPKPKSKSYGANFSWNKRTRVSTK |
K.DA..F.E..NGW.YD.E.R..PKP..KSY.ANFS.NKRT..STK | |
Retrocopy | KGDAAVFTE>TNGWRYDAEGRQAPKPMAKSYSANFS*NKRTSMSTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005452 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015851 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001362 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019465 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021764 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000013784 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000013496 | 1 retrocopy |
retro_pcap_268 ,
|
Pongo abelii | ENSPPYG00000015455 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016893 | 1 retrocopy |