RetrogeneDB ID: | retro_cpor_1111 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_47:9954373..9954677(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000005452 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.49 % |
Parental protein coverage: | 80.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAVAFA--EKNGWS |
VRI.VPA.NNMQSGVNNTKKWKMEFD.RERWENPLM.W.STA..LSNMVLT..TKEDAVAF......GW. | |
Retrocopy | VRISVPASNNMQSGVNNTKKWKMEFDIRERWENPLMDWTSTAYSLSNMVLTSGTKEDAVAFSXXXXXGWN |
Parental | YDVEERKVPKPKSKS-YGANFSWNKRTRVSTK |
YD..ERKVPK.KS.S..GAN.SW.KR.RVSTK | |
Retrocopy | YDIDERKVPKAKSES>NGANSSWDKRARVSTK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .76 RPM |
SRP017611_kidney | 0 .10 RPM | 35 .59 RPM |
SRP017611_liver | 0 .00 RPM | 25 .59 RPM |
SRP040447_lung | 0 .00 RPM | 15 .69 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 58 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005452 | 1 retrocopy |
retro_cpor_1111 ,
|
Erinaceus europaeus | ENSEEUG00000015851 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000001362 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015138 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019465 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021764 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000013784 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000013496 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015455 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016893 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004605 | 1 retrocopy |