RetrogeneDB ID: | retro_ptro_2208 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:169539931..169540693(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FBL | ||
Ensembl ID: | ENSPTRG00000010982 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.28 % |
Parental protein coverage: | 78.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GGNRGRG--RGGKRGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDDKIEY |
GG.R..G......R.......V.VEPHRHEGVFI.RG.EDALVT.N.VPG.SVYGE.RV...EG..K.EY | |
Retrocopy | GGQRRAGVAKSKSRRRKGAMVVSVEPHRHEGVFIYRGAEDALVTLNMVPGQSVYGERRVTVTEGGVKQEY |
Parental | RAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLA |
R.WNPFRSKLAAAILGGVDQIHIKP..KVLYLGAASGTTVSHVSDI.GPDGLVYAVEFSHR.GRDL.N.A | |
Retrocopy | RTWNPFRSKLAAAILGGVDQIHIKPKSKVLYLGAASGTTVSHVSDIIGPDGLVYAVEFSHRAGRDLVNVA |
Parental | KKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTAS |
KKRTNIIPV.EDARHP.KYRMLI.MVDVIFADVAQPDQ.RIVALNAHTFLRNGGHF.ISIKANCIDSTAS | |
Retrocopy | KKRTNIIPVLEDARHPLKYRMLIGMVDVIFADVAQPDQSRIVALNAHTFLRNGGHFLISIKANCIDSTAS |
Parental | AEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPK |
AEAVFASEV.K.QQEN.KPQEQLTLEPYERDHAVVVGVYRP.PK | |
Retrocopy | AEAVFASEVRKLQQENLKPQEQLTLEPYERDHAVVVGVYRPLPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 32 .55 RPM | 23 .33 RPM |
SRP007412_cerebellum | 19 .00 RPM | 44 .92 RPM |
SRP007412_heart | 0 .00 RPM | 26 .44 RPM |
SRP007412_kidney | 0 .37 RPM | 42 .29 RPM |
SRP007412_liver | 0 .10 RPM | 61 .87 RPM |
SRP007412_testis | 2 .00 RPM | 49 .64 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_99 |
Bos taurus | retro_btau_108 |
Sus scrofa | retro_sscr_39 |
Canis familiaris | retro_cfam_1697 |
Equus caballus | retro_ecab_308 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002579 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005412 | 1 retrocopy | |
Homo sapiens | ENSG00000105202 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014684 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007686 | 1 retrocopy | |
Mus musculus | ENSMUSG00000046865 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014234 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006463 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010982 | 2 retrocopies |
retro_ptro_2208 , retro_ptro_3074,
|
Pteropus vampyrus | ENSPVAG00000010849 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019229 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000030510 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007755 | 2 retrocopies |