RetrogeneDB ID: | retro_ogar_3102 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873716.1:2587759..2588587(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000030879 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FBL | ||
Ensembl ID: | ENSOGAG00000006463 | ||
Aliases: | None | ||
Description: | fibrillarin [Source:HGNC Symbol;Acc:3599] |
Percent Identity: | 83.51 % |
Parental protein coverage: | 79.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RGRGGGFRGRGRG-GGGGGGGGRG-GGF-QSGGNRGRGRGGGKRGNQSGKNVMVEPHRHEGVFICRGKED |
RG.G.G....G.G...G.G.GGRG.GG...SGGN.GRG.GGGKRGNQSGKNVMVEPH.HEGVFIC..KE. | |
Retrocopy | RGGGRGGFSEG*G>FRGHG*GGRGRGGR<RSGGNQGRGWGGGKRGNQSGKNVMVEPHQHEGVFICQEKEN |
Parental | ALVTKNLVPGESVYGEKRVSISEGDDKIEYRAWNPFRSKLAAAILGGIDQIHIKPGAKVLYLGAASGTTV |
ALVTKNLVPGESV.GE.RVSISEG.DKIEYRAWNPF.SKLAA.ILGGI.QIHIKPGA.VLYLGA.SGTT. | |
Retrocopy | ALVTKNLVPGESVCGETRVSISEGNDKIEYRAWNPFHSKLAA-ILGGIEQIHIKPGAMVLYLGATSGTTI |
Parental | SHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTR |
SHVSDIVGPDGLVY.VEFSHRSG.DLINLAKKR.NIIPVIEDA.H.HKY.M.I..VDVIFADVA.PDQT. | |
Retrocopy | SHVSDIVGPDGLVYTVEFSHRSGSDLINLAKKRPNIIPVIEDAQHSHKYQMFISIVDVIFADVAHPDQTQ |
Parental | IVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVY |
IVALNAHTFL.NGGHFVISIKANCIDSTASAE.VFASEVKKMQQENMKPQEQL.LEPYERDHAVV.GVY | |
Retrocopy | IVALNAHTFLHNGGHFVISIKANCIDSTASAEVVFASEVKKMQQENMKPQEQLILEPYERDHAVVMGVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002579 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005412 | 1 retrocopy | |
Homo sapiens | ENSG00000105202 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000014684 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007686 | 1 retrocopy | |
Mus musculus | ENSMUSG00000046865 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014234 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006463 | 2 retrocopies |
retro_ogar_3102 , retro_ogar_504,
|
Pan troglodytes | ENSPTRG00000010982 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010849 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019229 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000030510 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007755 | 2 retrocopies |