RetrogeneDB ID: | retro_pvam_116 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1470:25320..25668(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGA1 | ||
Ensembl ID: | ENSPVAG00000014283 | ||
Aliases: | None | ||
Description: | high mobility group AT-hook 1 [Source:HGNC Symbol;Acc:5010] |
Percent Identity: | 53.39 % |
Parental protein coverage: | 65.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SSSKSSQPLASKQE-KDGTEKRGRGRPRKQPPVSPGTTLVGSQKEPSEVPTPKRPRGRPKGSK-NKGRRR |
SSS.SSQ.LASKQ..KDGTEK.GRGRPRK.P..SPG..L.GS...PSEVPTP.RPR......K.N..... | |
Retrocopy | SSSNSSQRLASKQK<KDGTEKPGRGRPRKPPRGSPGAALIGSRRKPSEVPTPQRPRATQREKK>NSAAKP |
Parental | KK-RASRRSPQR---RSSDRAVPP--ASSSRSSFLLGLDAPLPLPPCP |
K..R...R...R...RSSDRAVPP.....S.......L..P.PLP..P | |
Retrocopy | KN*RRKKRASRRSP*RSSDRAVPPHWGAVSFWNWTARLPRPPPLPIGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015226 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000019529 | 2 retrocopies | |
Mus musculus | ENSMUSG00000046711 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000016076 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029838 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000014283 | 1 retrocopy |
retro_pvam_116 ,
|
Rattus norvegicus | ENSRNOG00000000488 | 1 retrocopy |