Parental gene:

HMGA1, ENSMMUG00000019529

Aliases:None
Description:high mobility group protein HMG-I/HMG-Y [Source:RefSeq peptide;Acc:NP_001253281]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:4:33938688..33947085(+)


>ENSMMUG00000019529
ATGAGCGAGTCGAGCTCGAAGTCCAGCCAGCCCTTGGCCTCCAAGCAGGAAAAGGACGGCACTGAGAAGCGGGGCCGGGG
CAGGCCGCGCAAGCAGCCTCCGGTGAGTCCCGGGACAGCGCTGGTAGGGAGTCAGAAGGAGCCCAGCGAAGTGCCAACAC
CTAAGAGACCTCGGGGCCGACCAAAGGGAAGCAAAAACAAGGCCTGGCCAAGGAGGAAGAGGAGGGCATCTCGCAGGAAT
CCTCGGAGGAGGAGCAGTGACCCATGCGTGCCGCCTGCCCCTCACTGGAGGAGCAGCTTCCTTCTGGGACTGGACAGCTT
TGCTCCGCTCCCACCGCCCCCGCCCCTTCCCCAGACCCACCATCACCACCGACTCTGGCCGCCACCCCCATCTTCCACCT
GTGCCCTCACCACCACACTACACAGCACACCAGCCGCTGCAGGGCTCCCATGGGCTGAGTGGGGAGCAGTTTTCCCCTGG
CCTCAGTTCCCAGCTCCCCCTGCCCACCCACGCATACACACATGCCCTCCTGGACAAGGCTAA

Library Parental gene expression (RPM)
SRP007412_brain 12 .33 RPM
SRP007412_brain_prefrontal_cortex 40 .14 RPM
SRP007412_cerebellum 11 .69 RPM
SRP007412_heart 7 .30 RPM
SRP007412_kidney 3 .40 RPM
SRP007412_liver 4 .28 RPM
SRP007412_testis 40 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001061 possible_ortholog 1 retrogene
retro_amel_1637,
Callithrix jacchus ENSCJAG00000015226 possible_ortholog 2 retrogenes
retro_cjac_1197, retro_cjac_3158,
Homo sapiens ENSG00000137309 possible_ortholog 4 retrogenes
retro_hsap_1175, retro_hsap_2277, retro_hsap_4663, retro_hsap_695,
Myotis lucifugus ENSMLUG00000010085 possible_ortholog 2 retrogenes
retro_mluc_1619, retro_mluc_2429,
Mus musculus ENSMUSG00000046711 ortholog_many2many 1 retrogene
retro_mmus_188,
Nomascus leucogenys ENSNLEG00000008303 possible_ortholog 1 retrogene
retro_nleu_1097,
Procavia capensis ENSPCAG00000016076 ortholog_one2many 1 retrogene
retro_pcap_236,
Pongo abelii ENSPPYG00000029838 ortholog_one2many 4 retrogenes
retro_pabe_1941, retro_pabe_2441, retro_pabe_3623, retro_pabe_960,
Pan troglodytes ENSPTRG00000040884 possible_ortholog 6 retrogenes
retro_ptro_1611, retro_ptro_2053, retro_ptro_3098, retro_ptro_499, retro_ptro_789, retro_ptro_807,
Pteropus vampyrus ENSPVAG00000014283 possible_ortholog 1 retrogene
retro_pvam_116,
Rattus norvegicus ENSRNOG00000000488 ortholog_many2many 1 retrogene
retro_rnor_164,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1276 68.22 71.11
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2. retro_mmul_2406 62.50 89.58
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Download FASTA sequences of all ENSMMUG00000019529 retrocopies