RetrogeneDB ID:

retro_mputfur_107

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896906.1:16415659..16416070(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMPUG00000019884
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:PLP2
Ensembl ID:ENSMPUG00000013817
Aliases:None
Description:proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087]


Retrocopy-Parental alignment summary:






>retro_mputfur_107
ATGGTGGAGTCTGAGCGCACCTCAGCCCGTGGCTGCTGTACTACCTTCACTAATTTCTTGTGCACCAGAAAGGGAACTCT
CCTATTTGCTGAGACTATATTGTGCCTGGTGATTCTAATCTGGTTCAGCATCTCAACACCAGGATACTCCACTCTGTCAG
TGGTTGAGATGATCCTTGCTGAGATCTTCTTTGTCATCTACATGTGTGACTTACCCACCAAGATACAATCCATCAACTGG
CCTTGGATTGATTTCTTCCGGTCCCTCATTGCCGTCACCCTCTACCTAATCACCTCCATTGTTGTCCTTGTCAACAGAGG
AAATCGCTCCATAATCATTGCAGGGGCACTGGGCCTTGCTGCTGCATGCCTCTTTGGCTATGATGCCTACATCACCTACC
CCTTGAGGTAA

ORF - retro_mputfur_107 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.21 %
Parental protein coverage: 89.47 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMADSERLSAPGCWAACTNFSRTRKGILLFAEIILCLVILICFSASTPGYSSLSVVEMILAAIFFVIYMCD
M..SER.SA.GC....TNF..TRKG.LLFAE.ILCLVILI.FS.STPGYS.LSVVEMILA.IFFVIYMCD
RetrocopyMVESERTSARGCCTTFTNFLCTRKGTLLFAETILCLVILIWFSISTPGYSTLSVVEMILAEIFFVIYMCD
ParentalLHTKIQIINWPWSDFFRTLIAAILYLITSIVVLVEGGNHSKIIAGVLGLLATSLFGYDAYITFPLR
L.TKIQ.INWPW.DFFR.LIA..LYLITSIVVLV..GN.S.IIAG.LGL.A..LFGYDAYIT.PLR
RetrocopyLPTKIQSINWPWIDFFRSLIAVTLYLITSIVVLVNRGNRSIIIAGALGLAAACLFGYDAYITYPLR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_107 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_107 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 16 parental genes, and 25 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000122881 retrocopy
retro_amel_1129,
Bos taurus ENSBTAG000000160933 retrocopies
retro_btau_1574, retro_btau_73, retro_btau_810,
Canis familiaris ENSCAFG000000157981 retrocopy
retro_cfam_933,
Equus caballus ENSECAG000000002161 retrocopy
retro_ecab_971,
Felis catus ENSFCAG000000038202 retrocopies
retro_fcat_1547, retro_fcat_256,
Homo sapiens ENSG000001020071 retrocopy
retro_hsap_3411,
Loxodonta africana ENSLAFG000000044831 retrocopy
retro_lafr_427,
Macaca mulatta ENSMMUG000000230221 retrocopy
retro_mmul_2124,
Mustela putorius furoENSMPUG00000013817 3 retrocopies
retro_mputfur_107 , retro_mputfur_462, retro_mputfur_969,
Mus musculus ENSMUSG000000311461 retrocopy
retro_mmus_94,
Nomascus leucogenys ENSNLEG000000013171 retrocopy
retro_nleu_2887,
Otolemur garnettii ENSOGAG000000038653 retrocopies
retro_ogar_2568, retro_ogar_2865, retro_ogar_473,
Pan troglodytes ENSPTRG000000218851 retrocopy
retro_ptro_2316,
Pteropus vampyrus ENSPVAG000000117702 retrocopies
retro_pvam_1214, retro_pvam_810,
Rattus norvegicus ENSRNOG000000394961 retrocopy
retro_rnor_2686,
Tursiops truncatus ENSTTRG000000169682 retrocopies
retro_ttru_1586, retro_ttru_767,


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