RetrogeneDB ID: | retro_mputfur_969 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896982.1:4861621..4861960(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLP2 | ||
Ensembl ID: | ENSMPUG00000013817 | ||
Aliases: | None | ||
Description: | proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087] |
Percent Identity: | 52.1 % |
Parental protein coverage: | 76.32 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | TNFSRTRKGI-LLFAEIILCLVILICFSAST-PGYSSLSVVEMILAAIFF-VIYMCDLHTKIQIINWPWS |
TNF..T.K....L.A.IILCLVILICFSA.T.P...SLSVVEM.L...FF.VIYM.DLH.K.Q.I..P.S | |
Retrocopy | TNFLCTQKEL<FLLADIILCLVILICFSALTQP*GHSLSVVEMVLT--FF>VIYMYDLHIKMQFIY*P*S |
Parental | DFFRTLIAAILYLITSIVVLVEGGNHSKIIAGVLGLLATSLFGYDAYIT |
.FF..LI.....L..S..V....GN.SK....V.......LFG.D.Y.T | |
Retrocopy | AFF*ILIVVNHELTMSTAVPSKQGNPSKTVTRV--PITKGLFGHDDYST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012288 | 1 retrocopy | |
Bos taurus | ENSBTAG00000016093 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000015798 | 1 retrocopy | |
Equus caballus | ENSECAG00000000216 | 1 retrocopy | |
Felis catus | ENSFCAG00000003820 | 2 retrocopies | |
Homo sapiens | ENSG00000102007 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004483 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000023022 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013817 | 3 retrocopies |
retro_mputfur_107, retro_mputfur_462, retro_mputfur_969 ,
|
Mus musculus | ENSMUSG00000031146 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001317 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003865 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000021885 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011770 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000039496 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016968 | 2 retrocopies |