RetrogeneDB ID: | retro_pvam_1405 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_80095:1..496(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MSMO1 | ||
Ensembl ID: | ENSPVAG00000013707 | ||
Aliases: | None | ||
Description: | methylsterol monooxygenase 1 [Source:HGNC Symbol;Acc:10545] |
Percent Identity: | 70.24 % |
Parental protein coverage: | 56.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | IATWGSLIIHEVIYFLFSLPGFLFQFIPYMKK-YKIQKDKPETWEGQWKCFKVLLFNHFCIQFPLICGTY |
IATWGSL..HE..YFLF.LPGFLFQFIPYMKK.YKIQKDK.ETWE.QW...KVLLFNHFCIQ.PLICGT. | |
Retrocopy | IATWGSLVVHEALYFLFCLPGFLFQFIPYMKK>YKIQKDKLETWEKQWQYLKVLLFNHFCIQLPLICGT- |
Parental | YF-TEYFNIPYDWETMPRWYLLLARCFGCAVIEDTWHYFLHRLLHHK-RIYKYIHKIHHEFQAP-GMEAE |
Y.......IPYDWE.MP.WY.L....FG...I.DTWHYFL.RL..H...IYK.IHK.HHEFQA..G.EAE | |
Retrocopy | YY>LQSISIPYDWERMPTWYMLWTGWFGYEIIKDTWHYFLNRLFLHN>KIYKCIHKTHHEFQATFGTEAE |
Parental | YAHPLETLILGTGFFMGIILLCDHVVLL |
Y...LETLILGTGFF.GI.LLCD..V.L | |
Retrocopy | YTRLLETLILGTGFFIGIMLLCDYIVFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005596 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007550 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000009301 | 1 retrocopy | |
Felis catus | ENSFCAG00000023004 | 1 retrocopy | |
Homo sapiens | ENSG00000052802 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015730 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000007061 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012994 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006501 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003769 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009281 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000016574 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013707 | 4 retrocopies | |
Sorex araneus | ENSSARG00000013546 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000000135 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012897 | 2 retrocopies |