RetrogeneDB ID:

retro_pvam_568

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_3798:44372..45023(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GSTP1
Ensembl ID:ENSPVAG00000008586
Aliases:None
Description:glutathione S-transferase pi 1 [Source:HGNC Symbol;Acc:4638]


Retrocopy-Parental alignment summary:






>retro_pvam_568
GCCATCTTCGTCTGCACTACAACCATGCTGCCCTACACCATTGTCTACTTCCCTGTTTGAGGGCGCTGTGAGGCCATGCA
CATGCTGCTGGCTGATCAGGGCTAGAGCTGGAAGGAGGAGGTTGTTACCAAGGAGAACTGGCTGCAGGGCTCACTCAAGG
CCTCCTGTCTATATAAACAGCTCCCCAAGTTCCAGGATAGAGACCTCACCCTGTACCAGTCCAATGCCATCCTGTACTAC
TTGGGCCGCCCCCTCAATCTGTATGAGAAGGACCAGTTGGAGGCAGCCCTGGTGGACGTGGTGAATGATGGCATGAAGGA
CATCCACTGCAAATACATCACCCTCATCTACACCAACTATGAGACGGGCAAGGAGGACTATGTGAAGGAGCTACCAGGGT
GCCTGAAGTCTTTTGAGATCCTGCTGTCCCAGGACCAGGGGGGCCAGGCCTTCATCGTGGGCAACCAGATGTTTGTGGAC
TGCAACCTGCTGGACTTGCTGTTGAATCACTAGATTCTGGCCCGCAGCTGCCTGGATTCCTTCCCCCTACTCTCAGCCTA
TGTGGCTTGCCTCAGTGCCCAGCCTAAGCTCAAGGACTTTCTGGCCTCCCCCAAGCATGTGAACCTACCTATCAGTGGCA
ACAGGAAACAG

ORF - retro_pvam_568 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.44 %
Parental protein coverage: 97.32 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAFFVCAATMPPYAIVYFPVQGRCEAMRMLLADQGQSWKEEVVTKETWLQGPLKASCLYGQLPKFQDGDLT
A.FVC..TM.PY.IVYFPV.GRCEAM.MLLADQG.SWKEEVVTKE.WLQG.LKASCLY.QLPKFQD.DLT
RetrocopyAIFVCTTTMLPYTIVYFPV*GRCEAMHMLLADQG*SWKEEVVTKENWLQGSLKASCLYKQLPKFQDRDLT
ParentalLYQSNAILRHLGRSLGLYGKDQREAALVDMVNDGVEDLRCKYGTFIYTNYEAGKENYVKELPEHLKPFET
LYQSNAIL..LGR.L.LY.KDQ.EAALVD.VNDG..D..CKY.T.IYTNYE.GKE.YVKELP..LK.FE.
RetrocopyLYQSNAILYYLGRPLNLYEKDQLEAALVDVVNDGMKDIHCKYITLIYTNYETGKEDYVKELPGCLKSFEI
ParentalLLAQNQGGQAFIVGNQISFADYNLLNLLLNHQVLAPSCLDSFPLLSAYVARLSARPKLKAFLASPEHVNL
LL.Q.QGGQAFIVGNQ..F.D.NLL.LLLNH..LA.SCLDSFPLLSAYVA.LSA.PKLK.FLASP.HVNL
RetrocopyLLSQDQGGQAFIVGNQM-FVDCNLLDLLLNH*ILARSCLDSFPLLSAYVACLSAQPKLKDFLASPKHVNL
ParentalPINGNNKQ
PI.GN.KQ
RetrocopyPISGNRKQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_568 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 23 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000010203 retrocopies
Canis familiaris ENSCAFG000000113494 retrocopies
Macropus eugenii ENSMEUG000000015192 retrocopies
Mustela putorius furoENSMPUG000000040292 retrocopies
Mus musculus ENSMUSG000000381551 retrocopy
Pteropus vampyrus ENSPVAG00000008586 6 retrocopies
Pteropus vampyrus ENSPVAG000000095591 retrocopy
Rattus norvegicus ENSRNOG000000182374 retrocopies



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