RetrogeneDB ID: | retro_rnor_2842 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:107409445..107410068(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000007501 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Gstp1 | ||
Ensembl ID: | ENSRNOG00000018237 | ||
Aliases: | Gstp1, GST-P, Gst3, Gstp, Gstp2 | ||
Description: | Glutathione S-transferase P [Source:UniProtKB/Swiss-Prot;Acc:P04906] |
Percent Identity: | 90.14 % |
Parental protein coverage: | 99.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MPPYTIVYFPVRGRCEATRMLLADQGQSWKEEVV-TIDVWLQGSLKSTCLYGQLPKFEDGDLTLYQSNAI |
MPPYTIVYFPVRGRCEA..MLLADQGQS.KEEVV.TIDVWLQGSLK.T.LYGQLPKFEDGDLTLYQSNAI | |
Retrocopy | MPPYTIVYFPVRGRCEAMGMLLADQGQS*KEEVV<TIDVWLQGSLKPTHLYGQLPKFEDGDLTLYQSNAI |
Parental | LRHLGRSLGLYGKDQKEAALVDMVNDGVEDLRCKYGTLIYTNYENGKDDYVKALPGHLKP-FETLLSQNQ |
LRHLGRSLGLYGKDQ..AALVD.VNDGVEDLRCKYGT.IYTNYENGKDDYVK.LPGHLKP.FETLLSQNQ | |
Retrocopy | LRHLGRSLGLYGKDQRKAALVDIVNDGVEDLRCKYGTFIYTNYENGKDDYVKSLPGHLKP<FETLLSQNQ |
Parental | GGKAFIVGNQISFADYNLLDLLLVHQVLA-PGCLDNF-PLLSAYVARLSARPKIKAFLSSPDHLNRPING |
GGKAFI.G.QISF.DYNLLDLLLVHQVL..PGCLDNF.PLLSAYVA.LSARPKIKAFLSSPDH.N.PING | |
Retrocopy | GGKAFIMGDQISFTDYNLLDLLLVHQVLT<PGCLDNF<PLLSAYVAHLSARPKIKAFLSSPDHVNHPING |
Parental | NGK |
NGK | |
Retrocopy | NGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 48 .75 RPM |
SRP017611_kidney | 0 .07 RPM | 229 .93 RPM |
SRP017611_liver | 0 .00 RPM | 12 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001020 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000011349 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000000879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001519 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011529 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000004029 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038155 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002230 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008586 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000018237 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000047034 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003746 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008003 | 1 retrocopy |