RetrogeneDB ID: | retro_amel_1921 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL196526.1:5754..6155(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000001020 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.74 % |
Parental protein coverage: | 63.81 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YTIVYFPVRGRCEAMRMLLADQGQSWKEEVV-TKETWLQGPLKASCLYGQLPKFQDGDLTLYQSNA-ILR |
YTIVYFPVRGRC.AM..LL.DQG.SWKEE....KETWLQG.LK.SCLYGQL..FQD.D.TLY.SNA.ILR | |
Retrocopy | YTIVYFPVRGRCKAMCVLLVDQGRSWKEEGLGAKETWLQGSLKSSCLYGQLRLFQDEDITLY*SNA<ILR |
Parental | HLGRSLGLYGKDQREAALLDVVNDGVEDLRCKYVMLIYTNYEAGKEEYLKALPGYLKPFETLLSQN |
HLG.SL.LY.KDQ.E.AL.DVV.DG.EDL..KY..LIYTNYEAGKEEY.KAL.G.LK.FETLLSQN | |
Retrocopy | HLGSSLRLYRKDQKEVALVDVVIDGMEDLC*KYLILIYTNYEAGKEEYVKAL-GHLKTFETLLSQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001020 | 3 retrocopies |
retro_amel_1921 , retro_amel_249, retro_amel_778,
|
Ailuropoda melanoleuca | ENSAMEG00000004970 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011349 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000000879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001519 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011529 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000004029 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038155 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002230 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008586 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000018237 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000003746 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008003 | 1 retrocopy |