RetrogeneDB ID: | retro_meug_1762 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold5750:25959..26550(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMEUG00000001519 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.82 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | RCAATRMLLADQGLDWKEDVVTIDAWMKGD-LKANCLYGQLPKFTDGDLILYQSNAILRHL-GRKHGLYG |
.C....MLL.DQ....K.DVVT.D.WM.G..LKA.CLYG.LPKFT..D..L.QSN.ILR.L.GR.HGLYG | |
Retrocopy | KCGSI*MLLNDQDQTSKKDVVTLDIWMQGE>LKARCLYGLLPKFTSRDFTLDQSNTILRYL<GRGHGLYG |
Parental | KDDREAALLDVANDGVEDLRTKYIDFIYXXXENGKDQYVKDLPTQLKPFETLLKQNPEGGAFIVGNKISF |
KD..EAAL.DV.NDGVEDL...Y..FI......GK.Q.VKDLP.QLKPF..LL.QN..G.AFI.G...SF | |
Retrocopy | KDLQEAALSDVVNDGVEDLWITYLYFI*LNSKEGKEQCVKDLPSQLKPFKMLLTQNQGGKAFITGD*TSF |
Parental | VDYNLLDLLLIHQILAPGCLDSFPLLSAYVARLSSRPKLQAFLASPQHTGLPINGNGKQ |
VDYNLLDLLLIHQ.L...CLD.F.L.SA.VA.LS..PKLQAFLASP.HT.LP..GNGKQ | |
Retrocopy | VDYNLLDLLLIHQTLVFSCLDTFLL*SAHVAPLSFLPKLQAFLASPPHTDLPVDGNGKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001020 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000011349 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000000879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001519 | 2 retrocopies |
retro_meug_1519, retro_meug_1762 ,
|
Myotis lucifugus | ENSMLUG00000011529 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000004029 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038155 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002230 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008586 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000018237 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000003746 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008003 | 1 retrocopy |