RetrogeneDB ID:

retro_pvam_773

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_113:322839..323564(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BZW1
Ensembl ID:ENSPVAG00000008111
Aliases:None
Description:basic leucine zipper and W2 domains 1 [Source:HGNC Symbol;Acc:18380]


Retrocopy-Parental alignment summary:






>retro_pvam_773
AAAAAGAAGTTTGAGCCTACACAGTTTCAAGACTGTATTATTCAAAGCTTATCTAAAACTGGTACTGATGTTGAAGCAGT
AGCAGTTTCTTGATGCTTCTGAAGCAAAACTTGATTACCACCAATATGCAGAAACGCCCTTTGACATCCTGGTGGCCAGC
AGAATGCTGGCCGCAGGTGGTATGCTGGCAGATGACATGATGCGTACAGATGTCTGTGTGTTAACAGCACAAGACCTAGA
AGGCATGCAAGCATTTGCTCAGGTCTTTAAAAAGTTAATCAGGCGCTACAAATACCTGGAGAAAGGTTTTGAAGATCAAG
TACAAAAGCTGCAGCTGTTCTAAAAGGTTTTTCCGAGTCGGAGAGAAACAAGCTGGCTATGTGTACTGGTGTTCTTCTGG
CTAATGGAACGCTTGATGCATCCGTTCTCCATAGCATTTAGAATGAGAATTTGGTTAAGGAACGGGTTTCAGCAGCTTTT
GCTATGAAACTCTTTAAATCATGGGGGAATGAAAAGGATATCAGTGCAGTAGCTGCAGGTCTTTGGAAATTCGGCATGGA
TAACAGACTGATGGAACTTTTTTCCTGCCAAAAAACAAAGCGTTGAACACTTCACAAAGTACTTCACGCGGGCAGGCTTG
AAAGAGCTTTCAGAATACGTTTGGAATCAGCAAACCATAGGAGCTCGTAAGGAACTCCAGAATAGAACTTCAAGAACAGA
TGTCT

ORF - retro_pvam_773 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.05 %
Parental protein coverage: 73.41 %
Number of stop codons detected: 1
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalKERFDPTQFQDCIIQGLTETGTDLEAVA-KFL-DASGAKLDYRRYAETLFDILVAGGMLAPGGTLADDMM
K..F.PTQFQDCIIQ.L..TGTD.EAVA..FL.DAS.AKLDY..YAET.FDILVA..MLA.GG.LADDMM
RetrocopyKKKFEPTQFQDCIIQSLSKTGTDVEAVA<SFL<DASEAKLDYHQYAETPFDILVASRMLAAGGMLADDMM
ParentalRTDVCVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLF-LKGFSESERNKLAMLTGVLLAN
RTDVCV..AQ.DLE.MQAFAQVF.KLIRRYKYLEKGFED.V.KL.LF.LKGFSESERNKLAM.TGVLLAN
RetrocopyRTDVCVLTAQ-DLEGMQAFAQVFKKLIRRYKYLEKGFEDQVQKLQLF<LKGFSESERNKLAMCTGVLLAN
ParentalGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMEL-FPANKQSVEHF
GTL.AS.L.S..NENLVKE.VSAAFA.KLFKSW.NEKDI.AVAA.L.K..MDNRLMEL.FPA.KQSVEHF
RetrocopyGTLDASVLHSI*NENLVKERVSAAFAMKLFKSWGNEKDISAVAAGLWKFGMDNRLMEL>FPAKKQSVEHF
ParentalTKYFTEAGLKELSEYVRNQQTIGARKELQK-ELQEQMS
TKYFT.AGLKELSEYV.NQQTIGARKELQ..ELQEQMS
RetrocopyTKYFTRAGLKELSEYVWNQQTIGARKELQN>ELQEQMS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_773 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 12 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000035438 retrocopies
Myotis lucifugus ENSMLUG000000016532 retrocopies
Pteropus vampyrus ENSPVAG00000008111 1 retrocopy
retro_pvam_773 ,
Pteropus vampyrus ENSPVAG000000145711 retrocopy



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