RetrogeneDB ID: | retro_pvam_481 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_3405:118881..120137(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BZW2 | ||
Ensembl ID: | ENSPVAG00000014571 | ||
Aliases: | None | ||
Description: | basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808] |
Percent Identity: | 88.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYRRYADTLFD |
MNKHQ.PVLT.QRFK..KRDEKEKF.PTVFRD.LV.GLNEAG.DL.AV.KFLDST.SRL.Y.R.ADTLF. | |
Retrocopy | MNKHQTPVLTSQRFKSQKRDEKEKFKPTVFRDILVPGLNEAGGDLKAVVKFLDSTRSRLGYHRNADTLFN |
Parental | ILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLF- |
ILVAGSML.PGGT..DD.DK.KMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLF. | |
Retrocopy | ILVAGSMLVPGGTHVDDDDKNKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLF> |
Parental | LKAFSETEQTKLAMLSGILLGNGTLPAAILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRK |
LK.F....QTKLA.LSGILLGN.T.PAAI.TSLFTDS.VKEG.AASFAV.LFKA...EKDANSVTSSLRK | |
Retrocopy | LKPFPK*-QTKLAVLSGILLGNDTFPAAIFTSLFTDSSVKEGTAASFAVELFKARIEEKDANSVTSSLRK |
Parental | ANLDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYV |
ANLDKRLLELFPVNRQ.VDHFAKYFTD..LKELSDFLR.QQ.LGTRKELQKELQE.L.QE.PIKEVV.YV | |
Retrocopy | ANLDKRLLELFPVNRQTVDHFAKYFTDTRLKELSDFLRAQQPLGTRKELQKELQEHLCQEGPIKEVVPYV |
Parental | K-EEMKRNDLPETAVIGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELILLQKVQE |
K.EEMKRNDLPETA.IGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSE.I.LQKVQE | |
Retrocopy | K>EEMKRNDLPETAMIGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSEMIFLQKVQE |
Parental | YCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEE |
YCYDNIHFMKAFQKIVVLFYKA.VLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEE | |
Retrocopy | YCYDNIHFMKAFQKIVVLFYKANVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEE |
Parental | N |
N | |
Retrocopy | N |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001663 | 4 retrocopies | |
Equus caballus | ENSECAG00000022038 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017045 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005256 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017763 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008111 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014571 | 1 retrocopy |
retro_pvam_481 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000002506 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009806 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009867 | 1 retrocopy |