RetrogeneDB ID:

retro_pvam_481

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_3405:118881..120137(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BZW2
Ensembl ID:ENSPVAG00000014571
Aliases:None
Description:basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808]


Retrocopy-Parental alignment summary:






>retro_pvam_481
ATGAATAAGCATCAGACGCCAGTGCTAACAAGCCAGCGGTTCAAATCTCAGAAAAGGGATGAAAAAGAGAAATTCAAACC
TACAGTCTTCAGGGATATACTTGTCCCGGGGCTTAATGAAGCTGGTGGTGACCTTAAAGCTGTAGTCAAGTTTCTGGACT
CTACAAGATCAAGATTAGGTTATCATCGCAATGCAGACACACTCTTCAATATCCTAGTGGCTGGCAGTATGCTTGTCCCT
GGAGGGACACACGTAGATGATGATGACAAGAACAAGATGACCAACCACTGTGTATTTTCAGCAAATGAAGATCATGAAAC
CATCCGAAACTATGCTCAGGTCTTCAATAAACTCATCAGGAGATATAAATATTTGGAAAAGGCATTCGAGGATGAAATGA
AAAAGCTTCTCCTCTTCCTTAAAGCCTTTTCCAAAATAGCAGACAAAGCTGGCGGTGCTGTCAGGCATCCTGCTGGGCAA
CGACACCTTTCCTGCCGCCATCTTCACCAGTCTCTTCACTGACAGCTCAGTCAAAGAAGGCACTGCAGCCTCATTTGCTG
TCGAGCTTTTTAAAGCAAGGATAGAAGAAAAAGATGCCAACTCTGTTACCTCTTCTTTGAGAAAAGCCAACTTAGATAAG
AGGCTGCTTGAACTCTTTCCAGTTAACAGACAGACTGTGGATCATTTTGCTAAATACTTCACGGACACAAGACTAAAGGA
GCTTTCTGATTTCCTGCGAGCCCAGCAGCCCCTGGGCACCAGGAAGGAACTGCAGAAGGAGCTCCAGGAGCATCTTTGTC
AGGAAGGCCCGATCAAGGAGGTGGTGCCCTATGTTAAAAGAAGAAATGAAGAGGAATGACCTTCCGGAAACAGCAATGAT
TGGACTTCTGTGGACATGTATCATGAATGCTGTTGAATGGAACAAGAAGGAGGAACTTGTTGCAGAGCAGGCCCTTAAGC
ACCTGAAGCAATATGCTCCCCTGCTGGCTGTGTTCAGCTCCCAAGGCCAGTCAGAGATGATCTTCCTCCAGAAGGTTCAG
GAATATTGTTACGACAACATCCATTTCATGAAAGCCTTTCAGAAGATTGTGGTTCTCTTTTATAAAGCCAATGTGCTAAG
TGAAGAAGCAATTTTGAAATGGTACAAAGAAGCACACGTGGCCAAAGGCAAAAGTGTTTTTCTTGACCAGATGAAGAAAT
TTGTTGAATGGTTACAAAATGCAGAGGAAGAATCTGAATCAGAAGGTGAGGAAAAT

ORF - retro_pvam_481 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.12 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYRRYADTLFD
MNKHQ.PVLT.QRFK..KRDEKEKF.PTVFRD.LV.GLNEAG.DL.AV.KFLDST.SRL.Y.R.ADTLF.
RetrocopyMNKHQTPVLTSQRFKSQKRDEKEKFKPTVFRDILVPGLNEAGGDLKAVVKFLDSTRSRLGYHRNADTLFN
ParentalILVAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLF-
ILVAGSML.PGGT..DD.DK.KMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLF.
RetrocopyILVAGSMLVPGGTHVDDDDKNKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLF>
ParentalLKAFSETEQTKLAMLSGILLGNGTLPAAILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRK
LK.F....QTKLA.LSGILLGN.T.PAAI.TSLFTDS.VKEG.AASFAV.LFKA...EKDANSVTSSLRK
RetrocopyLKPFPK*-QTKLAVLSGILLGNDTFPAAIFTSLFTDSSVKEGTAASFAVELFKARIEEKDANSVTSSLRK
ParentalANLDKRLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYV
ANLDKRLLELFPVNRQ.VDHFAKYFTD..LKELSDFLR.QQ.LGTRKELQKELQE.L.QE.PIKEVV.YV
RetrocopyANLDKRLLELFPVNRQTVDHFAKYFTDTRLKELSDFLRAQQPLGTRKELQKELQEHLCQEGPIKEVVPYV
ParentalK-EEMKRNDLPETAVIGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELILLQKVQE
K.EEMKRNDLPETA.IGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSE.I.LQKVQE
RetrocopyK>EEMKRNDLPETAMIGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSEMIFLQKVQE
ParentalYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEE
YCYDNIHFMKAFQKIVVLFYKA.VLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEE
RetrocopyYCYDNIHFMKAFQKIVVLFYKANVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEE
ParentalN
N
RetrocopyN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_481 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 14 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000016634 retrocopies
Equus caballus ENSECAG000000220381 retrocopy
Macaca mulatta ENSMMUG000000170451 retrocopy
Ochotona princeps ENSOPRG000000052562 retrocopies
Pongo abelii ENSPPYG000000177631 retrocopy
Pteropus vampyrus ENSPVAG000000081111 retrocopy
Pteropus vampyrus ENSPVAG00000014571 1 retrocopy
retro_pvam_481 ,
Ictidomys tridecemlineatus ENSSTOG000000025061 retrocopy
Tarsius syrichta ENSTSYG000000098061 retrocopy
Tursiops truncatus ENSTTRG000000098671 retrocopy



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