RetrogeneDB ID: | retro_chof_2060 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_47008:7518..8370(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000003543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.31 % |
Parental protein coverage: | 79.6 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QKPTLSGQRFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFLDASGAKLDYRRYAETLFDILVA |
QKP.L.GQRFKTRKRDEKE.F.PT.F.D...QGL.E.G.DLEAVAKFLD..G..LDYR.YA.TLFDILVA | |
Retrocopy | QKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYRHYADTLFDILVA |
Parental | GGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLKGFS |
G.MLAPGGT..DD...T.....CVF.A.ED.ET....AQVFNKLIRRYKYLEK.FEDE.KKLLLFLK.FS | |
Retrocopy | GSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLFLKAFS |
Parental | ESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVSMDN |
E.E..KLAML.GVLL.NGTL.A.IL.SL....LVKEG..A.FAVKLFK.W..EKD.N.V..SLRK...D. | |
Retrocopy | ETEQTKLAMLSGVLLGNGTLPATILTSLFADSLVKEGTAASFAVKLFKAWMAEKDANTVTSSLRKANIDK |
Parental | RLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMK |
RL.ELFP.N.QSV.HF.KYFT.AGLKELS...R.QQ..G.RKELQKELQE..S...P.K...LYVKEEMK | |
Retrocopy | RLLELFPVNRQSVDHFAKYFTDAGLKELSDFLRVQQSLGTRKELQKELQEHLSQECPIKEMVLYVKEEMK |
Parental | KNNI |
.N.. | |
Retrocopy | RNDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011878 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003543 | 8 retrocopies |
retro_chof_1519, retro_chof_2060 , retro_chof_2092, retro_chof_2451, retro_chof_2517, retro_chof_689, retro_chof_726, retro_chof_838,
|
Cavia porcellus | ENSCPOG00000010449 | 1 retrocopy | |
Homo sapiens | ENSG00000082153 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000016296 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003355 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001653 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015000 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012344 | 1 retrocopy | |
Mus musculus | ENSMUSG00000051223 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006929 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012791 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008111 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013638 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000003639 | 1 retrocopy |