RetrogeneDB ID:

retro_pvam_92

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_131:56614..56870(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSPVAG00000003521
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pvam_92
ATGCCCAAAAATAAAGGTAAAGGAGGCAAAAACAAGTGCAGGGTAAGAATGAGAATAAATCTGAAAAAAAAAAAAAAAGA
GTTGGTGTATAAAGAGGATGAGTAAGGGTAAGCTCAGGTCATCAAAATGTTGAGGGAAAAGATTATTAGAAGCAATGTTT
TTTGATGGTATAAAAAGGTTATGCCATATCAAAGGAAAATTGAGAGAAATGATCTGAATAAATATCTCAGATATGGTATT
GGTTGACCTGCCAGAC

ORF - retro_pvam_92 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.14 %
Parental protein coverage: 56.43 %
Number of stop codons detected: 3
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMPKNKGKGGKN--RRRGKNENESEKRELVFKEDGQEYAQVIKML-GNGRLEAMCFDGVKRLCHIRGKLRK
MPKNKGKGGKN..R.R..........ELV.KED....AQVIKML.G...LEAM.FDG.KRLCHI.GKLR.
RetrocopyMPKNKGKGGKNKCRVRMRINLXXXXXELVYKEDE*G*AQVIKML>GKRLLEAMFFDGIKRLCHIKGKLRE
Parental----KTSDIILVGLRD
......SD..LV.L.D
RetrocopyMI*INISDMVLVDLPD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_92 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000053711 retrocopy
Dipodomys ordii ENSDORG000000115361 retrocopy
Homo sapiens ENSG000001736742 retrocopies
Gorilla gorilla ENSGGOG000000121863 retrocopies
Myotis lucifugus ENSMLUG000000129772 retrocopies
Monodelphis domestica ENSMODG000000278201 retrocopy
Mus musculus ENSMUSG000000671941 retrocopy
Otolemur garnettii ENSOGAG000000081821 retrocopy
Pan troglodytes ENSPTRG000000225041 retrocopy
Pteropus vampyrus ENSPVAG00000003521 2 retrocopies
retro_pvam_780, retro_pvam_92 ,
Rattus norvegicus ENSRNOG000000057361 retrocopy
Sus scrofa ENSSSCG000000298641 retrocopy



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