RetrogeneDB ID: | retro_rnor_1051 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:53303319..53303787(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000023840 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2i | ||
Ensembl ID: | ENSRNOG00000017907 | ||
Aliases: | Ube2i, UbcE2A | ||
Description: | SUMO-conjugating enzyme UBC9 [Source:UniProtKB/Swiss-Prot;Acc:P63281] |
Percent Identity: | 89.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRML-FKDDYP |
MS.IALS.LAQERKAWRKDHPFGFVAVPTKNPDGT.NLMNWECAI.GKKGTPWEGGLFKL.ML.F.D.YP | |
Retrocopy | MSWIALSQLAQERKAWRKDHPFGFVAVPTKNPDGTINLMNWECAIHGKKGTPWEGGLFKLWML<FND-YP |
Parental | SSPPKCKFE-PPLFHPNVYPSG-TVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY |
SSPPKCKFE..PLFHPNVY.S..TVCL.ILEEDKDW.PAIT.KQILLGIQEL.NEPNIQDPAQAEAYTIY | |
Retrocopy | SSPPKCKFE<APLFHPNVYLSA<TVCLPILEEDKDWWPAITVKQILLGIQELRNEPNIQDPAQAEAYTIY |
Parental | CQNRVEYEKRVRAQAKKFAPS |
CQNRVEYEKRVRAQAKKFAPS | |
Retrocopy | CQNRVEYEKRVRAQAKKFAPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .35 RPM |
SRP017611_liver | 0 .00 RPM | 8 .20 RPM |