Parental gene:

UBE2I, ENSCJAG00000013249

Aliases:None
Description:ubiquitin-conjugating enzyme E2I [Source:HGNC Symbol;Acc:12485]
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:1348228..1360313(+)


>ENSCJAG00000013249
ATGTCGGGGATCGCCCTCAGCAGACTCGCTCAGGAGAGGAAAGCGTGGAGAAAAGACCACCCGTTTGGTTTCGTGGCTGT
CCCAACAAAAAACCCCGATGGCACGATGAACCTCATGAACTGGGAGTGCGCCATTCCAGGAAAGAAAGGGACTCCGTGGG
AAGGAGGCTTGTTTAAACTACGGATGCTTTTCAAAGATGACTATCCATCTTCACCACCGAAATGTAAATTTGAACCACCG
TTATTTCACCCAAATGTGTACCCTTCGGGGACAGTGTGCCTGTCCATCTTAGAGGAGGACAAGGACTGGAGGCCAGCCAT
CACAATCAAACAGATCCTATTAGGAATACAGGAACTTCTAAATGAACCAAATATCCAAGACCCAGCCCAAGCAGAGGCCT
ACACGATTTACTGCCAAAACAGAGTGGAGTATGAGAAGAGGGTCCGAGCACAAGCCAAGAAGTTCGCGCCCTCGTAA

Library Parental gene expression (RPM)
SRP051959_colon 13 .82 RPM
SRP051959_heart 13 .37 RPM
SRP051959_kidney 14 .80 RPM
SRP051959_liver 9 .96 RPM
SRP051959_lung 16 .97 RPM
SRP051959_lymph_node 23 .20 RPM
SRP051959_skeletal_muscle 10 .46 RPM
SRP051959_spleen 20 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007721 ortholog_one2many 1 retrogene
retro_amel_1843,
Bos taurus ENSBTAG00000038866 ortholog_one2one 1 retrogene
retro_btau_1470,
Canis familiaris ENSCAFG00000031449 ortholog_one2one 4 retrogenes
retro_cfam_1363, retro_cfam_1991, retro_cfam_2090, retro_cfam_541,
Cavia porcellus ENSCPOG00000010431 ortholog_one2one 1 retrogene
retro_cpor_156,
Equus caballus ENSECAG00000015831 ortholog_one2one 1 retrogene
retro_ecab_350,
Felis catus ENSFCAG00000027291 ortholog_one2one 2 retrogenes
retro_fcat_1994, retro_fcat_873,
Loxodonta africana ENSLAFG00000018318 ortholog_one2one 1 retrogene
retro_lafr_541,
Myotis lucifugus ENSMLUG00000008229 ortholog_one2one 2 retrogenes
retro_mluc_1112, retro_mluc_1327,
Macaca mulatta ENSMMUG00000003654 ortholog_one2one 1 retrogene
retro_mmul_981,
Mustela putorius furo ENSMPUG00000015763 ortholog_one2one 1 retrogene
retro_mputfur_1234,
Mus musculus ENSMUSG00000015120 ortholog_one2one 4 retrogenes
retro_mmus_1341, retro_mmus_1997, retro_mmus_3182, retro_mmus_3419,
Nomascus leucogenys ENSNLEG00000008525 ortholog_one2one 1 retrogene
retro_nleu_1298,
Otolemur garnettii ENSOGAG00000001428 ortholog_one2one 4 retrogenes
retro_ogar_2367, retro_ogar_2731, retro_ogar_548, retro_ogar_641,
Rattus norvegicus ENSRNOG00000017907 ortholog_one2one 11 retrogenes
retro_rnor_1051, retro_rnor_1448, retro_rnor_1764, retro_rnor_1913, retro_rnor_2036, retro_rnor_2147, retro_rnor_2301, retro_rnor_2423, retro_rnor_2927, retro_rnor_708, retro_rnor_832,
Sarcophilus harrisii ENSSHAG00000007034 ortholog_one2one 1 retrogene
retro_shar_218,
Sus scrofa ENSSSCG00000021560 ortholog_one2one 1 retrogene
retro_sscr_319,
Ictidomys tridecemlineatus ENSSTOG00000010233 ortholog_one2one 3 retrogenes
retro_itri_1341, retro_itri_1459, retro_itri_1601,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2914 92.78 61.39
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Download FASTA sequences of all ENSCJAG00000013249 retrocopies