RetrogeneDB ID: | retro_rnor_1448 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 19:26701453..26701891(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2i | ||
Ensembl ID: | ENSRNOG00000017907 | ||
Aliases: | Ube2i, UbcE2A | ||
Description: | SUMO-conjugating enzyme UBC9 [Source:UniProtKB/Swiss-Prot;Acc:P63281] |
Percent Identity: | 89.73 % |
Parental protein coverage: | 91.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KAWRK-DHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF |
KAWRK.DHPFGFVAVPTKN.DGTMNLM.WECAIPGKKGTPWEGGL.KLRMLF.DDY.S.PPK.KFEPPLF | |
Retrocopy | KAWRKKDHPFGFVAVPTKNSDGTMNLMKWECAIPGKKGTPWEGGLLKLRMLFQDDYRSLPPKWKFEPPLF |
Parental | HPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQA |
HPNVYPSGTV.LSILE.DKDWRP.ITIKQILL.I.ELLNEPNIQDPAQAEAYTIYCQNRV.YEKRVR.QA | |
Retrocopy | HPNVYPSGTVGLSILEKDKDWRPTITIKQILLRI*ELLNEPNIQDPAQAEAYTIYCQNRVGYEKRVRVQA |
Parental | KKFAPS |
KKFAPS | |
Retrocopy | KKFAPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 15 .35 RPM |
SRP017611_liver | 0 .00 RPM | 8 .20 RPM |