RetrogeneDB ID: | retro_rnor_1207 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 16:82532..83410(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rcn1 | ||
Ensembl ID: | ENSRNOG00000013452 | ||
Aliases: | Rcn1, Rcn | ||
Description: | reticulocalbin-1 precursor [Source:RefSeq peptide;Acc:NP_001102056] |
Percent Identity: | 79.32 % |
Parental protein coverage: | 90.46 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | VVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLSPDESKERLGKIVDRIDSDGDGLVTTEELKVW |
.V.P..EL.E..P.DN..FQYD.E.FLG.EDSK.F.QL.P.ESKERLGKIVD..D.DGDGL.TTEELKVW | |
Retrocopy | LVQPN*ELSEWQPKDNHNFQYDQEVFLGMEDSKIFNQLRPEESKERLGKIVDQTDTDGDGLITTEELKVW |
Parental | IKRVQKR-YIYDNVAKVWKDYDRDKDEKISWEEYKQATYGYYLGNPAEFQDSSDHHTFKKMLPRDERRFK |
.K.V.K..YIY.NVAKV.KDY.RD.D.KISWEEYKQA.YG.YLGN.AEFQDS.DHH.FKK.LP.D..RFK | |
Retrocopy | MKQVKKY<YIYNNVAKVRKDYVRDIDRKISWEEYKQAIYG*YLGNHAEFQDSFDHHNFKKLLP*D*WRFK |
Parental | ASDLDGDLTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQDEYIADMFSHEDNGPEPDWVL |
ASDLDGDLTAT.EEFTAFL..EEFEHMKEIVVLETLE.ID.NGD.FVD.DEYI.DMFSHEDNGPEPDWVL | |
Retrocopy | ASDLDGDLTATWEEFTAFLNAEEFEHMKEIVVLETLENIDNNGDAFVDHDEYIKDMFSHEDNGPEPDWVL |
Parental | SEREQFNDFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARHLVYESDKNKDEMLTKEEILDNWNMFVGSQ |
SE.E.FN.F..LNK.GKLDKDEI.HWI.P.DYDHAQAEA.HLVYESDKNKDEMLTKEEILDNWNMF.GSQ | |
Retrocopy | SEFE*FNGF*YLNKHGKLDKDEICHWI-P*DYDHAQAEAQHLVYESDKNKDEMLTKEEILDNWNMFEGSQ |
Parental | ATNYGEDLTKNHDEL |
.TNY.EDLTKNHDEL | |
Retrocopy | VTNYREDLTKNHDEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 46 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .40 RPM |
SRP017611_liver | 0 .07 RPM | 8 .94 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000049449 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003385 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013452 | 28 retrocopies |
retro_rnor_1207 , retro_rnor_1224, retro_rnor_2111, retro_rnor_2112, retro_rnor_2113, retro_rnor_2352, retro_rnor_2353, retro_rnor_2354, retro_rnor_2355, retro_rnor_2408, retro_rnor_2409, retro_rnor_2410, retro_rnor_2434, retro_rnor_2435, retro_rnor_2436, retro_rnor_2437, retro_rnor_2438, retro_rnor_2486, retro_rnor_2508, retro_rnor_2509, retro_rnor_2510, retro_rnor_2511, retro_rnor_2513, retro_rnor_2664, retro_rnor_2711, retro_rnor_2716, retro_rnor_2760, retro_rnor_797,
|