Parental gene: | RCN1, ENSPPYG00000003385 |
| Aliases: | None |
| Description: | reticulocalbin 1, EF-hand calcium binding domain [Source:HGNC Symbol;Acc:9934] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 11:37267206..37282107(-) |
>ENSPPYG00000003385
ATGGCGCGCGGTGGCCGCGGCCGCCGCCTGGGGTTCGCCCTGGGGCTGCTGCTGGCGCTGGTGCTGGCGCCGCGGGTTCT
GCGGGCCAAGCCCACGGTGCGCAAAGAGCGCGTGGTGCGGCCCGACTCGGAGCTGGGCGAGCGGCCCCCTGAGGACAACC
AGAGCTTCAAGTACGACCACGAGGCCTTCCTGGGCAAGGAGGACTCCAAGACCTTCGACCAGCTCACCCCGGACGAGAGC
AAGCAGAGGCTGGGGAAGATTGTTGATCGAATTGACAATGATGGGGATGGCTTTGTCACTACTGAGGAGCTGAAAACCTG
GATCAAACGGGTGCAGAAAAGATACATCTTCGATAATGTCGCCAAAGTCTGGAAGGATTATGATAGGGACAAGGATGATA
AAATTTCCTGGGAAGAATACAAACAAGCCACCTATGGTTACTACCTAGGAAACCCCGCAGAGTTTCATGATTCTTCAGAT
CATCACACTTTTAAAAAGATGCTGCCACGTGATGAGAGAAGATTCAAAGCTGCAGACCTCAATGGTGACCTGACAGCTAC
TCGGGAGGAGTTCACTGCCTTTCTGCATCCTGAAGAGTTTGAACATATGAAGGAAATTGTGGTTTTGGAAACCCTGGAGG
ACATCGACAAGAACGGGGATGGGTTTGTGGATCAGGATGAGTATATTGCGGATATGTTTTCCCATGAGGAGAATGGCCCT
GAGCCAGACTGGGTTTTATCAGAACGGGAGCAGTTTAATGAATTCCGGGATCTGAACAAGGACGGGAAGTTGGACAAAGA
TGAGATTCGCCACTGGATCCTCCCTCAAGATTACGATCATGCACAGGCTGAGGCCAGGCATCTGGTATATGAGTCAGACA
AAAACAAGGATGAGAAGCTAACTAAAGAGGAAATATTGGAGAACTGGAACATGTTTGTTGGAAGCCAAGCTACCAATTAT
GGGGAAGATCTCACAAAAAATCATGATGAGCTTTGA
ATGGCGCGCGGTGGCCGCGGCCGCCGCCTGGGGTTCGCCCTGGGGCTGCTGCTGGCGCTGGTGCTGGCGCCGCGGGTTCT
GCGGGCCAAGCCCACGGTGCGCAAAGAGCGCGTGGTGCGGCCCGACTCGGAGCTGGGCGAGCGGCCCCCTGAGGACAACC
AGAGCTTCAAGTACGACCACGAGGCCTTCCTGGGCAAGGAGGACTCCAAGACCTTCGACCAGCTCACCCCGGACGAGAGC
AAGCAGAGGCTGGGGAAGATTGTTGATCGAATTGACAATGATGGGGATGGCTTTGTCACTACTGAGGAGCTGAAAACCTG
GATCAAACGGGTGCAGAAAAGATACATCTTCGATAATGTCGCCAAAGTCTGGAAGGATTATGATAGGGACAAGGATGATA
AAATTTCCTGGGAAGAATACAAACAAGCCACCTATGGTTACTACCTAGGAAACCCCGCAGAGTTTCATGATTCTTCAGAT
CATCACACTTTTAAAAAGATGCTGCCACGTGATGAGAGAAGATTCAAAGCTGCAGACCTCAATGGTGACCTGACAGCTAC
TCGGGAGGAGTTCACTGCCTTTCTGCATCCTGAAGAGTTTGAACATATGAAGGAAATTGTGGTTTTGGAAACCCTGGAGG
ACATCGACAAGAACGGGGATGGGTTTGTGGATCAGGATGAGTATATTGCGGATATGTTTTCCCATGAGGAGAATGGCCCT
GAGCCAGACTGGGTTTTATCAGAACGGGAGCAGTTTAATGAATTCCGGGATCTGAACAAGGACGGGAAGTTGGACAAAGA
TGAGATTCGCCACTGGATCCTCCCTCAAGATTACGATCATGCACAGGCTGAGGCCAGGCATCTGGTATATGAGTCAGACA
AAAACAAGGATGAGAAGCTAACTAAAGAGGAAATATTGGAGAACTGGAACATGTTTGTTGGAAGCCAAGCTACCAATTAT
GGGGAAGATCTCACAAAAAATCATGATGAGCTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 35 .05 RPM |
| SRP007412_cerebellum | 21 .77 RPM |
| SRP007412_heart | 16 .20 RPM |
| SRP007412_kidney | 31 .32 RPM |
| SRP007412_liver | 30 .08 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Homo sapiens | ENSG00000049449 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000017982 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000013452 | ortholog_one2many | 28 retrogenes |
retro_rnor_1207, retro_rnor_1224, retro_rnor_2111, retro_rnor_2112, retro_rnor_2113, retro_rnor_2352, retro_rnor_2353, retro_rnor_2354, retro_rnor_2355, retro_rnor_2408, retro_rnor_2409, retro_rnor_2410, retro_rnor_2434, retro_rnor_2435, retro_rnor_2436, retro_rnor_2437, retro_rnor_2438, retro_rnor_2486, retro_rnor_2508, retro_rnor_2509, retro_rnor_2510, retro_rnor_2511, retro_rnor_2513, retro_rnor_2664, retro_rnor_2711, retro_rnor_2716, retro_rnor_2760, retro_rnor_797,
|
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_2976 | 88.17 | 84.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000003385 retrocopies