RetrogeneDB ID: | retro_rnor_2436 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:23249882..23250851(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rcn1 | ||
Ensembl ID: | ENSRNOG00000013452 | ||
Aliases: | Rcn1, Rcn | ||
Description: | reticulocalbin-1 precursor [Source:RefSeq peptide;Acc:NP_001102056] |
Percent Identity: | 75.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | MARGGRLGLALGLLLALVLALRAKPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLS |
MA.G..LGLALGLLL.LVL...AK..V.KER.V..D.EL.E...E.NQSFQYD.E.FLGK.DSKTFDQLS | |
Retrocopy | MAGGVCLGLALGLLLVLVLVMPAKHMVCKERLVQSD*ELREWQSENNQSFQYDQEVFLGK-DSKTFDQLS |
Parental | PDESKERLGKIVDRIDSD-GDGLVTTEELKVWIKRVQKRYIYDNVAKVWKDYDRDKDEKISWEEY-KQAT |
PD.SKERLGK..D.IDS..GDGLVTTEELKV.I..V.KR.IYDNV.KVW.DYD.D.DEKISWEE..KQAT | |
Retrocopy | PD*SKERLGKTIDPIDSE<GDGLVTTEELKV*INQVEKRHIYDNVDKVWNDYDSDIDEKISWEEK<KQAT |
Parental | YGYYLGNPAEFQDSSDHHTFKKMLPRDERRFKASDLDGDLTATREEFTAFLHPEEFEHMKEIVVLETLED |
YGY.LGN.AEFQDSSDHHTFKK.LP.DERRF.ASD....L.A..EEFTAFLHPE.FE.MKEIV.LETLED | |
Retrocopy | YGYCLGNHAEFQDSSDHHTFKKILPQDERRFNASDFHCNLRAPQEEFTAFLHPE*FERMKEIVLLETLED |
Parental | IDKNGDG-FVDQDEYIADM-FSHEDNGPEPDWVLSEREQFNDFRDLNKDGKLDKDEIRHWILPQDYDHAQ |
I.KN.DG.FV..DEYI.DM.FS.EDNGPEPDWVLSE..QFNDF.DLNKDGKLDK.E..HW.LP.D.DHAQ | |
Retrocopy | ISKNRDG<FVN*DEYIMDM>FSREDNGPEPDWVLSEQGQFNDFHDLNKDGKLDKNETHHWLLPHDDDHAQ |
Parental | AEARHLVYESDKNKDEMLTKEEILDNWNMFVGSQATNYG-EDLTKNHDEL |
AEA.HLVYE.DKNKDE.L.KEEILDNW.MFVGSQ.TNYG.E.LTKNH..L | |
Retrocopy | AEAQHLVYEPDKNKDETLKKEEILDNWIMFVGSQVTNYG<ESLTKNHSDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 46 .66 RPM |
SRP017611_kidney | 0 .00 RPM | 28 .40 RPM |
SRP017611_liver | 0 .00 RPM | 8 .94 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000049449 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003385 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013452 | 28 retrocopies |
retro_rnor_1207, retro_rnor_1224, retro_rnor_2111, retro_rnor_2112, retro_rnor_2113, retro_rnor_2352, retro_rnor_2353, retro_rnor_2354, retro_rnor_2355, retro_rnor_2408, retro_rnor_2409, retro_rnor_2410, retro_rnor_2434, retro_rnor_2435, retro_rnor_2436 , retro_rnor_2437, retro_rnor_2438, retro_rnor_2486, retro_rnor_2508, retro_rnor_2509, retro_rnor_2510, retro_rnor_2511, retro_rnor_2513, retro_rnor_2664, retro_rnor_2711, retro_rnor_2716, retro_rnor_2760, retro_rnor_797,
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