RetrogeneDB ID: | retro_rnor_1873 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:25518600..25518887(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Arpc5 | ||
Ensembl ID: | ENSRNOG00000028062 | ||
Aliases: | None | ||
Description: | Actin-related protein 2/3 complex subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q4KLF8] |
Percent Identity: | 66. % |
Parental protein coverage: | 65.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MTAALQAALKNP-PINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSD |
.T.ALQ.A...P.PI.TKSQAVKD.AGSIVLKVLISFKANDIE.AVQ.LD.NG..LL.....K....PSD | |
Retrocopy | VTTALQDACSPP<PISTKSQAVKDQAGSIVLKVLISFKANDIERAVQALDRNGMVLLIN--IKALRAPSD |
Parental | NSSAMLLQWHEKALAAGGVGSIVRVLTARK |
NSS..LLQ.HEK.L...GV.SI..VLT.RK | |
Retrocopy | NSSTILLQGHEKTLVR-GVVSIIHVLTVRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 58 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .78 RPM |
SRP017611_liver | 0 .00 RPM | 34 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000560 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010375 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000014969 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007194 | 1 retrocopy | |
Mus musculus | ENSMUSG00000008475 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014317 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028062 | 1 retrocopy |
retro_rnor_1873 ,
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