RetrogeneDB ID: | retro_rnor_2286 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:49278745..49279535(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tdg | ||
Ensembl ID: | ENSRNOG00000027124 | ||
Aliases: | None | ||
Description: | G/T mismatch-specific thymine DNA glycosylase [Source:RefSeq peptide;Acc:NP_446181] |
Percent Identity: | 75.94 % |
Parental protein coverage: | 68.39 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | YKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDD-HTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRIL |
YK.HHY.G...HFWKCLF.SGLSEVQL.H.DD..T.P........NMVER.TPGSK.LSSK.FREG.RIL | |
Retrocopy | YKEHHYSG*ISHFWKCLFLSGLSEVQLSHTDD<LTTPYPGNMASGNMVERMTPGSKCLSSKGFREGRRIL |
Parental | VQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDK |
VQKLQKYQPR..VFNGK.IYE.F.KE.FGVKVKNLE.GLQPHKIPD.ETLCYVM.SSSA.C.Q.PRAQDK | |
Retrocopy | VQKLQKYQPRRVVFNGKGIYETFGKEDFGVKVKNLELGLQPHKIPDIETLCYVMSSSSAGCTQLPRAQDK |
Parental | VHYYIKLKDLRDQLKGIERSTDVQEVQYTFDLQLAQEDAKRTAVKEEKYDPGYEAAYGGACGENPCNGEP |
VH..IKLKD.RDQ..GIE..TDVQEVQ.T.D.QLAQED.K..AVKEE.YDP.YEAAYG.ACGENPCNG.P | |
Retrocopy | VHDSIKLKD*RDQVEGIEHNTDVQEVQNTLDRQLAQEDGKKMAVKEENYDPAYEAAYGSACGENPCNGQP |
Parental | -CGFASNGLTANSAELGGESAPSDVPNGQWMAQSFAEQIPSFNNCGTGEQEAGSHA |
.CGF.SNGLTAN.AE..GESAP.DV.NGQWM..SFAEQIPSFNN.GT.EQE.GSHA | |
Retrocopy | <CGFVSNGLTANRAEPRGESAPGDVLNGQWMV*SFAEQIPSFNNHGTQEQEEGSHA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 32 .10 RPM |
SRP017611_liver | 0 .00 RPM | 19 .77 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000013722 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019930 | 1 retrocopy | |
Homo sapiens | ENSG00000139372 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003813 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034674 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016313 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000027124 | 1 retrocopy |
retro_rnor_2286 ,
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