RetrogeneDB ID: | retro_rnor_2686 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:52603580..52604030(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Plp2 | ||
Ensembl ID: | ENSRNOG00000039496 | ||
Aliases: | Plp2, A4-LSB | ||
Description: | Proteolipid protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6P742] |
Percent Identity: | 92.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADSERLSAPGCWLACTSFSRTKKGILLFAEIILCLVILICFSASTSAYSSLSVIEMIFAAVLFVFYMCD |
MADSERLSAPGCWLACTSFSR.KKGILLFAEIILCLVILICFSASTSAYSSL..IEMIF.AVLFVFY.C. | |
Retrocopy | MADSERLSAPGCWLACTSFSRSKKGILLFAEIILCLVILICFSASTSAYSSLLAIEMIFVAVLFVFYVCH |
Parental | LHSKISFINWPWTDFFRSLIAAILYLITSIVVLVEGRGSSKIVAGVLGLLATLLFGYDAYITFPLKQQRH |
LHSKISFI.WPWTDFFRSLI.AILYLITSIVVLVEGRGSS..VAGVLGLLATLLFGYDAYITFPLKQQRH | |
Retrocopy | LHSKISFISWPWTDFFRSLI-AILYLITSIVVLVEGRGSSIFVAGVLGLLATLLFGYDAYITFPLKQQRH |
Parental | TAAPTDPTDGP |
TA.PTDPT.GP | |
Retrocopy | TASPTDPTNGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .22 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .28 RPM |
SRP017611_liver | 0 .00 RPM | 2 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016093 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000015798 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004483 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013817 | 3 retrocopies | |
Mus musculus | ENSMUSG00000031146 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000039496 | 1 retrocopy |
retro_rnor_2686 ,
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