RetrogeneDB ID: | retro_rnor_2828 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:79670594..79671059(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000002321 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rfk | ||
Ensembl ID: | ENSRNOG00000022273 | ||
Aliases: | None | ||
Description: | riboflavin kinase [Source:RefSeq peptide;Acc:NP_001014128] |
Percent Identity: | 100. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MRSLPFFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGEVHKMVVSIGWNPY |
MRSLPFFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGEVHKMVVSIGWNPY | |
Retrocopy | MRSLPFFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGEVHKMVVSIGWNPY |
Parental | YKNVKKSMETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKQLDLPEHLKLKD |
YKNVKKSMETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKQLDLPEHLKLKD | |
Retrocopy | YKNVKKSMETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKQLDLPEHLKLKD |
Parental | DNFFQVSKSKIMNGH |
DNFFQVSKSKIMNGH | |
Retrocopy | DNFFQVSKSKIMNGH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 16 .54 RPM |
SRP017611_kidney | 0 .07 RPM | 69 .29 RPM |
SRP017611_liver | 0 .07 RPM | 26 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000031816 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015769 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010358 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000988 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000001904 | 2 retrocopies | |
Mus musculus | ENSMUSG00000024712 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001622 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013120 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000019302 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000022273 | 5 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015887 | 3 retrocopies |