Parental gene:

ENSSHAG00000015887

Aliases:None
Description:None
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL841507.1:1949276..1955226(+)


>ENSSHAG00000015887
CAGCCGGCTTGGGAGGGCTATTGCGGCTTCTGTTGGGTCAGCGGTGTGCGGAGGTTCCGTCGCGTGCCCTTCGTCGGCAG
CTTTCTGGGGAGGGCCGCAAACGCGCGCCCGGTCTCCCTCCTGCCTTGTGCCCTTAGGAATCTCCCTCCCTCCCCCTCCC
CCTTTCCCTCCACTCCCGGCTGGCCCGGGGGAACCGTTGCTCTGAACTCGACGGCGGCTCCGCCGGACTCTCCGCCCGGG
CCGTTTCCGGAGCCCGGACTCAGCGACGTGATGAAGCACCTGCCTTATTTCTGCCGCGGCAAGGTGGTGCGGGGCTTCGG
ACGGGGCTCCAACTACTTAAAAATCTATAGATCTAACTTTCCTGAGCAAGTAGTGGATAATCTTCCACATGATTTATCTC
CTGGAATTTATTATGGTTGGGCCTCTGTTGGAAATGGAGATGTCCATAAAATGGTTTTAAGTATAGGATGGAACCCATAC
TACAAGAATACTAAAAAATCTGTGGAAACTCACATTATACATACCTTCAAAGAGGACTTCTATGGGGAAATCCTTAGTAT
AGTCATCACTGGCTACATCAGACCAGAAAAAAACTTTAGTTCAGTTGATGCCCTTATTTCTGCAATTCAAGATGATATTG
AAGAAGCTAAGAGACAACTGGATTTACCAGAGCATTTGAAACTCAAAGAAGATAATTTCTTCCATATGCCAGAAAACAAA
ATAGTGAATGGCCACTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003553 ortholog_one2many 1 retrogene
retro_amel_611,
Choloepus hoffmanni ENSCHOG00000009540 ortholog_one2many 35 retrogenes
retro_chof_1009, retro_chof_1035, retro_chof_1036, retro_chof_1399, retro_chof_1415, retro_chof_1426, retro_chof_1506, retro_chof_1743, retro_chof_1816, retro_chof_182, retro_chof_1898, retro_chof_2088, retro_chof_210, retro_chof_2122, retro_chof_2138, retro_chof_2139, retro_chof_218, retro_chof_2283, retro_chof_2307, retro_chof_2600, retro_chof_2651, retro_chof_2675, retro_chof_302, retro_chof_372, retro_chof_374, retro_chof_404, retro_chof_497, retro_chof_523, retro_chof_633, retro_chof_640, retro_chof_75, retro_chof_834, retro_chof_882, retro_chof_927, retro_chof_983,
Callithrix jacchus ENSCJAG00000031816 ortholog_many2many 3 retrogenes
retro_cjac_2553, retro_cjac_4032, retro_cjac_654,
Erinaceus europaeus ENSEEUG00000015769 ortholog_one2many 1 retrogene
retro_eeur_425,
Homo sapiens ENSG00000135002 ortholog_one2many 5 retrogenes
retro_hsap_2590, retro_hsap_2693, retro_hsap_2828, retro_hsap_305, retro_hsap_532,
Gorilla gorilla ENSGGOG00000010358 ortholog_many2many 1 retrogene
retro_ggor_339,
Macropus eugenii ENSMEUG00000000988 ortholog_one2many 6 retrogenes
retro_meug_1179, retro_meug_1815, retro_meug_1922, retro_meug_2144, retro_meug_268, retro_meug_698,
Monodelphis domestica ENSMODG00000001904 ortholog_many2many 2 retrogenes
retro_mdom_1404, retro_mdom_194,
Mus musculus ENSMUSG00000024712 ortholog_one2many 1 retrogene
retro_mmus_3439,
Nomascus leucogenys ENSNLEG00000002051 ortholog_one2many 4 retrogenes
retro_nleu_1502, retro_nleu_1523, retro_nleu_1787, retro_nleu_2401,
Oryctolagus cuniculus ENSOCUG00000001622 ortholog_one2many 1 retrogene
retro_ocun_591,
Otolemur garnettii ENSOGAG00000013120 ortholog_one2many 5 retrogenes
retro_ogar_1435, retro_ogar_1475, retro_ogar_3257, retro_ogar_725, retro_ogar_735,
Pongo abelii ENSPPYG00000019302 ortholog_many2many 5 retrogenes
retro_pabe_1224, retro_pabe_1622, retro_pabe_1763, retro_pabe_217, retro_pabe_2289,
Pan troglodytes ENSPTRG00000021036 ortholog_one2many 3 retrogenes
retro_ptro_1514, retro_ptro_246, retro_ptro_398,
Pteropus vampyrus ENSPVAG00000014032 ortholog_one2many 4 retrogenes
retro_pvam_1063, retro_pvam_255, retro_pvam_347, retro_pvam_951,
Rattus norvegicus ENSRNOG00000022273 ortholog_one2many 5 retrogenes
retro_rnor_1099, retro_rnor_1899, retro_rnor_2212, retro_rnor_2828, retro_rnor_2863,
Tursiops truncatus ENSTTRG00000014859 ortholog_one2many 4 retrogenes
retro_ttru_1624, retro_ttru_164, retro_ttru_1822, retro_ttru_95,
Vicugna pacos ENSVPAG00000002619 ortholog_one2many 1 retrogene
retro_vpac_360,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_shar_79 85.89 66.12
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2. retro_shar_85 86.96 65.71
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3. retro_shar_99 88.89 66.12
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Download FASTA sequences of all ENSSHAG00000015887 retrocopies