RetrogeneDB ID: | retro_rnor_2829 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:83141518..83141820(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf10 | ||
Ensembl ID: | ENSRNOG00000007992 | ||
Aliases: | Srsf10, Fusip1 | ||
Description: | serine/arginine-rich splicing factor 10 [Source:RefSeq peptide;Acc:NP_001020909] |
Percent Identity: | 88.35 % |
Parental protein coverage: | 62.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRY-RRSRSRSYERRRSRS |
D.EDALHNLDRKWICG.Q.EIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDR..RRSRS.SYERRRSRS | |
Retrocopy | DVEDALHNLDRKWICGHQTEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRI<RRSRSQSYERRRSRS |
Parental | RSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDR |
.SFDYNYRR.YSPRN.RPTGRP..SRSH.DNDR | |
Retrocopy | CSFDYNYRRAYSPRN-RPTGRPWCSRSHCDNDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 22 .75 RPM |
SRP017611_liver | 0 .00 RPM | 8 .74 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009869 | 2 retrocopies | |
Bos taurus | ENSBTAG00000008072 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004836 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020883 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000024533 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008699 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000014286 | 1 retrocopy | |
Homo sapiens | ENSG00000188529 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000000392 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000028520 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015845 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013180 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000029326 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015374 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001726 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000007992 | 3 retrocopies |
retro_rnor_1657, retro_rnor_2800, retro_rnor_2829 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000000956 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016150 | 2 retrocopies |