RetrogeneDB ID: | retro_rnor_502 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:175488044..175488429(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Snrpc | ||
Ensembl ID: | ENSRNOG00000000493 | ||
Aliases: | Snrpc, Snrp1c, U1-C, U1C | ||
Description: | U1 small nuclear ribonucleoprotein C [Source:UniProtKB/Swiss-Prot;Acc:D3ZCL3] |
Percent Identity: | 82.48 % |
Parental protein coverage: | 79.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GRKHKENVKDYYQKWMEEQAQSLIDKTTQAAAFQQ-GKIPPAPFSAPPPAGAMIPPPP-SLPGPPRPGMM |
GRKH....K.YYQKWMEE.AQS..DKTT..AAFQQ.GKIPPAPFSAPPPAGAMIPPPP.SLPGPPRP.MM | |
Retrocopy | GRKH----KGYYQKWMEERAQSPTDKTT--AAFQQ<GKIPPAPFSAPPPAGAMIPPPP<SLPGPPRPSMM |
Parental | PAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRPGMTRPDR |
PAPHM.GPPMMP..GP.PPGM.PVGPAPGMRPPM..H.PMMPGPPMMRPPA.PMMVPT..GMTRPDR | |
Retrocopy | PAPHMEGPPMMPIIGPFPPGMIPVGPAPGMRPPMESHIPMMPGPPMMRPPACPMMVPTQLGMTRPDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .12 RPM |
SRP017611_liver | 0 .00 RPM | 5 .45 RPM |