Parental gene:

Snrpc, ENSRNOG00000000493

Aliases:Snrpc, Snrp1c, U1-C, U1C
Description:U1 small nuclear ribonucleoprotein C [Source:UniProtKB/Swiss-Prot;Acc:D3ZCL3]
Organism:Rat (Rattus norvegicus)
Coordinates:20:9611425..9629603(+)


>ENSRNOG00000000493
GGGATAGCCAACGGCCTGTGGAGCAACATGCCCAAGTTTTATTGTGACTACTGTGATACGTATCTTACCCACGATTCTCC
GTCTGTGAGGAAGACACACTGCAGTGGTCGGAAACACAAAGAGAATGTGAAAGACTATTACCAGAAATGGATGGAAGAAC
AGGCCCAGAGCCTGATTGACAAAACAACTCAAGCGGCTGCATTTCAACAAGGAAAGATCCCTCCAGCTCCGTTCTCTGCT
CCTCCGCCTGCAGGGGCCATGATCCCGCCTCCCCCCAGTCTCCCGGGTCCTCCTCGGCCTGGCATGATGCCTGCACCCCA
CATGGGAGGCCCTCCCATGATGCCAATGATGGGCCCCCCTCCTCCTGGGATGATGCCTGTGGGACCAGCTCCTGGGATGA
GACCACCCATGGGAGGCCATATGCCCATGATGCCCGGGCCTCCAATGATGAGACCTCCCGCCCGCCCTATGATGGTGCCC
ACACGGCCTGGCATGACCCGGCCAGACAGATAA

Library Parental gene expression (RPM)
SRP017611_liver 5 .45 RPM
SRP017611_kidney 13 .12 RPM
SRP017611_brain 3 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001231 possible_ortholog 3 retrogenes
retro_cfam_348, retro_cfam_402, retro_cfam_409,
Callithrix jacchus ENSCJAG00000015321 possible_ortholog 16 retrogenes
retro_cjac_1009, retro_cjac_1015, retro_cjac_1064, retro_cjac_1750, retro_cjac_1937, retro_cjac_2014, retro_cjac_2395, retro_cjac_2456, retro_cjac_2785, retro_cjac_3056, retro_cjac_3110, retro_cjac_400, retro_cjac_4010, retro_cjac_617, retro_cjac_770, retro_cjac_873,
Monodelphis domestica ENSMODG00000013904 ortholog_one2one 1 retrogene
retro_mdom_22,
Mus musculus ENSMUSG00000024217 ortholog_one2one 21 retrogenes
retro_mmus_1079, retro_mmus_1084, retro_mmus_1231, retro_mmus_1313, retro_mmus_1374, retro_mmus_1400, retro_mmus_1515, retro_mmus_1649, retro_mmus_1673, retro_mmus_1781, retro_mmus_1876, retro_mmus_2087, retro_mmus_2211, retro_mmus_2506, retro_mmus_2973, retro_mmus_3089, retro_mmus_3366, retro_mmus_431, retro_mmus_531, retro_mmus_566, retro_mmus_638,
Nomascus leucogenys ENSNLEG00000008392 possible_ortholog 2 retrogenes
retro_nleu_2129, retro_nleu_99,
Oryctolagus cuniculus ENSOCUG00000026668 possible_ortholog 3 retrogenes
retro_ocun_1019, retro_ocun_184, retro_ocun_196,
Otolemur garnettii ENSOGAG00000008755 possible_ortholog 9 retrogenes
retro_ogar_1040, retro_ogar_130, retro_ogar_1763, retro_ogar_183, retro_ogar_2434, retro_ogar_3064, retro_ogar_3322, retro_ogar_3377, retro_ogar_697,
Pongo abelii ENSPPYG00000017272 possible_ortholog 4 retrogenes
retro_pabe_1271, retro_pabe_3066, retro_pabe_3225, retro_pabe_915,
Sarcophilus harrisii ENSSHAG00000000945 possible_ortholog 1 retrogene
retro_shar_112,
Sus scrofa ENSSSCG00000001531 ortholog_one2one 1 retrogene
retro_sscr_709,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_445 91.23 99.41
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2. retro_rnor_483 71.03 84.12
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3. retro_rnor_495 75.26 55.29
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4. retro_rnor_502 82.48 79.41
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5. retro_rnor_630 65.45 62.94
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6. retro_rnor_705 75.45 64.71
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7. retro_rnor_706 75.45 64.71
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8. retro_rnor_707 74.55 64.71
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9. retro_rnor_730 98.24 100.00
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10. retro_rnor_747 87.57 98.24
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11. retro_rnor_778 72.27 68.82
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12. retro_rnor_802 61.96 53.53
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13. retro_rnor_889 82.25 98.82
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14. retro_rnor_1027 86.63 100.00
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15. retro_rnor_1079 86.63 100.00
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16. retro_rnor_1100 86.79 61.76
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17. retro_rnor_1196 80.38 92.94
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18. retro_rnor_1219 79.87 89.41
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19. retro_rnor_1421 71.07 92.35
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20. retro_rnor_1628 76.74 100.00
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21. retro_rnor_1637 86.02 54.71
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22. retro_rnor_1701 77.32 56.47
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23. retro_rnor_1761 68.97 67.65
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24. retro_rnor_2259 84.91 61.76
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25. retro_rnor_2261 84.91 61.76
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26. retro_rnor_2385 54.10 67.65
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27. retro_rnor_2480 78.95 99.41
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28. retro_rnor_2663 73.53 99.41
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29. retro_rnor_2875 85.21 99.41
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30. retro_rnor_2893 83.91 99.41
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Download FASTA sequences of all ENSRNOG00000000493 retrocopies