RetrogeneDB ID: | retro_sara_128 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_3940:2391..3009(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSARG00000014402 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPL |
RAVLKF.A...ATPIAGRFTPGT.TNQIQ.AF.E.RLLVVTDPRADHQPLTE.SYVNLPTIALCNTDSPL | |
Retrocopy | RAVLKFTATMDATPIAGRFTPGTSTNQIQVAFQELRLLVVTDPRADHQPLTEVSYVNLPTIALCNTDSPL |
Parental | RYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTK |
.Y.D.AI.CNN.GAHSVG...W......L...GTIS.EHP.EVMPDL.FYR.P.E.EKEEQAAAEK.V.K | |
Retrocopy | HYADVAILCNNQGAHSVG-LMWWM----LHRGGTISCEHPGEVMPDLCFYRGPVESEKEEQAAAEKVVIK |
Parental | EEFQGEWTAPAPEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGTTTEW |
EEFQ.EWTAPAPE.T.TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATED.SAAP.AQATEWVG.TTEW | |
Retrocopy | EEFQSEWTAPAPESTSTQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATED*SAAPNAQATEWVGITTEW |
Parental | S |
S | |
Retrocopy | S |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |