Parental gene:

RPSA, ENSECAG00000013062

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:16:45926224..45931574(-)


>ENSECAG00000013062
ATGTCCGGAGCCCTTGACGTCCTGCAAATGAAGGAGGAGGATGTCCTCAAATTCCTTGCAGCAGGAACCCACTTAGGTGG
CACCAACCTTGACTTCCAGATGGAACAGTACATCTACAAAAGGAAAAGTGATGGCATCTACATCATAAATTTGAAGAGAA
CCTGGGAGAAGCTGCTGCTGGCAGCTCGTGCCATTGTTGCCATTGAAAACCCAGCTGACGTCAGTGTCATATCCTCCAGG
AATACTGGCCAGCGAGCTGTGCTGAAGTTTGCTGCTGCCACTGGAGCCACTCCTATTGCTGGCCGCTTCACTCCTGGAAC
CTTCACTAACCAGATCCAGGCAGCCTTCCGGGAACCGAGACTTCTGGTGGTAACTGATCCCAGGGCTGACCACCAGCCTC
TCACAGAGGCGTCTTATGTTAACCTGCCTACCATTGCTCTGTGTAACACGGACTCTCCCCTGCGCTATGTGGACATCGCC
ATCCCATGCAACAATAAGGGAGCTCACTCTGTGGGTCTGATGTGGTGGATGCTTGCCCGGGAAGTTCTGCGCATGCGGGG
TACCATCTCCCGTGAACACCCATGGGAGGTCATGCCTGATCTCTACTTCTACAGAGATCCTGAAGAGATTGAAAAGGAAG
AGCAGGCTGCTGCTGAAAAGGCTGTGACCAAGGAGGAATTTCAGGGTGAATGGACTGCTCCTGCTCCTGAGTTCACTGCT
ACTCAGCCTGAGGTTGCAGACTGGTCTGAAGGCGTGCAGGTGCCCTCTGTGCCTATTCAGCAGTTCCCTACTGAAGACTG
GAGTGCTCAGCCTGCCACTGAAGACTGGTCTGCAGCTCCCACTGCTCAGGCCACTGAGTGGGTAGGAACAACCACTGAGT
GGTCTTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 165 .40 RPM
SRP021940_embryo 177 .83 RPM
SRP021940_cerebellum 61 .70 RPM
SRP021940_testis 82 .61 RPM
SRP021940_placental_villous 82 .80 RPM
SRP021940_articular_cartilage 160 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004183 possible_ortholog 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000008962 ortholog_one2many 13 retrogenes
Bos taurus ENSBTAG00000009757 possible_ortholog 19 retrogenes
Canis familiaris ENSCAFG00000005101 ortholog_one2many 27 retrogenes
Callithrix jacchus ENSCJAG00000009675 possible_ortholog 15 retrogenes
Cavia porcellus ENSCPOG00000008715 possible_ortholog 7 retrogenes
Dasypus novemcinctus ENSDNOG00000004048 possible_ortholog 27 retrogenes
Dipodomys ordii ENSDORG00000008267 ortholog_one2many 1 retrogene
Erinaceus europaeus ENSEEUG00000005292 possible_ortholog 2 retrogenes
Echinops telfairi ENSETEG00000018160 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000002739 ortholog_one2many 22 retrogenes
Homo sapiens ENSG00000168028 possible_ortholog 2 retrogenes
Gorilla gorilla ENSGGOG00000015038 possible_ortholog 11 retrogenes
Loxodonta africana ENSLAFG00000032009 possible_ortholog 5 retrogenes
Macropus eugenii ENSMEUG00000008169 possible_ortholog 14 retrogenes
Microcebus murinus ENSMICG00000004518 ortholog_one2many 32 retrogenes
Macaca mulatta ENSMMUG00000007930 possible_ortholog 2 retrogenes
Macaca mulatta ENSMMUG00000022965 possible_ortholog 19 retrogenes
Monodelphis domestica ENSMODG00000010967 ortholog_one2many 2 retrogenes
Mustela putorius furo ENSMPUG00000002463 possible_ortholog 21 retrogenes
Mus musculus ENSMUSG00000032518 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000005626 possible_ortholog 49 retrogenes
Otolemur garnettii ENSOGAG00000028830 possible_ortholog 8 retrogenes
Ochotona princeps ENSOPRG00000004505 ortholog_one2many 16 retrogenes
Pongo abelii ENSPPYG00000013993 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000022841 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000007794 possible_ortholog 19 retrogenes
Rattus norvegicus ENSRNOG00000018645 possible_ortholog 27 retrogenes
Sorex araneus ENSSARG00000014402 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000006896 ortholog_one2many 2 retrogenes
Sus scrofa ENSSSCG00000011266 possible_ortholog 9 retrogenes
Tupaia belangeri ENSTBEG00000015946 possible_ortholog 54 retrogenes
Tarsius syrichta ENSTSYG00000004458 possible_ortholog 6 retrogenes
Tursiops truncatus ENSTTRG00000014496 possible_ortholog 24 retrogenes
Vicugna pacos ENSVPAG00000012307 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_46 97.28 99.66
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ecab_71 98.31 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ecab_193 61.73 54.24
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_ecab_453 69.63 63.73
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_ecab_592 71.88 74.24
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSECAG00000013062 retrocopies