Parental gene:

RPSA, ENSAMEG00000008962

Aliases:None
Description:None
Organism:Panda (Ailuropoda melanoleuca)
Coordinates:GL193815.1:203010..207455(+)


>ENSAMEG00000008962
ATGTCCGGAGCCCTTGATGTCCTGCAAATGAAGGAGGAGGATGTCCTCAAATTCCTTGCAGCAGGAACCCACTTAGGTGG
CACCAACCTTGATTTTCAAATGGAACAGTACATCTACAAAAGGAAAAGTGATGGTATCTACATCATAAATCTGAAGAGAA
CCTGGGAGAAGCTTCTGCTGGCAGCTCGTGCCATTGTTGCCATTGAAAACCCAGCTGATGTCAGTGTCATATCATCCAGG
AATACTGGCCAGGTTTGTGAACAATATCGAGCTGTGCTGAAATTTGCTGCTGCTACTGGAGCCACTCCTATTGCTGGCCG
CTTCACTCCTGGGACATTCACTAACCAGATCCAGGCAGCCTTCCGAGAGCCAAGACTTCTGGTGGTTACTGATCCCAGGG
CTGACCACCAGCCTCTTACAGAGGCGTCTTATGTTAACCTGCCTACCATTGCTCTGTGTAACACAGACTCTCCTCTGCGC
TATGTGGACATCGCCATCCCTTGCAACAACAAGGGAGCTCACTCAGTGGGTCTGATGTGGTGGATGCTGGCCAGGGAAGT
TCTGCGCATGCGTGGCACCATTTCCCGTGAACACCCATGGGAGGTCATGCCTGATCTCTACTTCTACAGAGATCCTGAAG
AGATTGAAAAGGAAGAGCAGGCCGCTGCTGAAAAGGCTGTGACCAAGGAGGAATTTCAGGGTGAATGGACAGCTCCAGCT
CCTGAGTTCACTGCTACTCAGCCTGAAGTCGCAGACTGGTCTGAAGGCGTGCAGGTGCCCTCTGTGCCGATTCAGCAGTT
CCCGACTGAAGACTGGAGCGCCCAGCCGGCCACTGAAGACTGGTCTGCAGCTCCTACTGCTCAGGCCACTGAATGGGTAG
GAACAACCACTGAGTGGTCT

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000004183 possible_ortholog 1 retrogene
Bos taurus ENSBTAG00000009757 possible_ortholog 19 retrogenes
Canis familiaris ENSCAFG00000005101 ortholog_one2one 27 retrogenes
Callithrix jacchus ENSCJAG00000009675 possible_ortholog 15 retrogenes
Cavia porcellus ENSCPOG00000008715 possible_ortholog 7 retrogenes
Dasypus novemcinctus ENSDNOG00000004048 possible_ortholog 27 retrogenes
Dipodomys ordii ENSDORG00000008267 ortholog_one2one 1 retrogene
Equus caballus ENSECAG00000013062 ortholog_one2many 5 retrogenes
Erinaceus europaeus ENSEEUG00000005292 possible_ortholog 2 retrogenes
Echinops telfairi ENSETEG00000018160 possible_ortholog 4 retrogenes
Felis catus ENSFCAG00000002739 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000168028 possible_ortholog 2 retrogenes
Gorilla gorilla ENSGGOG00000015038 possible_ortholog 11 retrogenes
Loxodonta africana ENSLAFG00000032009 possible_ortholog 5 retrogenes
Macropus eugenii ENSMEUG00000008169 possible_ortholog 14 retrogenes
Microcebus murinus ENSMICG00000004518 ortholog_one2one 32 retrogenes
Macaca mulatta ENSMMUG00000007930 possible_ortholog 2 retrogenes
Macaca mulatta ENSMMUG00000022965 possible_ortholog 19 retrogenes
Monodelphis domestica ENSMODG00000010967 ortholog_one2one 2 retrogenes
Mustela putorius furo ENSMPUG00000002463 possible_ortholog 21 retrogenes
Mus musculus ENSMUSG00000032518 possible_ortholog 1 retrogene
Nomascus leucogenys ENSNLEG00000005626 possible_ortholog 49 retrogenes
Otolemur garnettii ENSOGAG00000028830 possible_ortholog 8 retrogenes
Ochotona princeps ENSOPRG00000004505 ortholog_one2one 16 retrogenes
Pongo abelii ENSPPYG00000013993 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000022841 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000007794 possible_ortholog 19 retrogenes
Rattus norvegicus ENSRNOG00000018645 possible_ortholog 27 retrogenes
Sorex araneus ENSSARG00000014402 possible_ortholog 10 retrogenes
Sarcophilus harrisii ENSSHAG00000006896 ortholog_one2one 2 retrogenes
Sus scrofa ENSSSCG00000011266 possible_ortholog 9 retrogenes
Tupaia belangeri ENSTBEG00000015946 possible_ortholog 54 retrogenes
Tarsius syrichta ENSTSYG00000004458 possible_ortholog 6 retrogenes
Tursiops truncatus ENSTTRG00000014496 possible_ortholog 24 retrogenes
Vicugna pacos ENSVPAG00000012307 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_amel_196 59.72 71.33
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2. retro_amel_430 84.69 68.67
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3. retro_amel_808 79.79 63.33
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4. retro_amel_943 79.17 63.33
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5. retro_amel_1091 76.92 51.33
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6. retro_amel_1276 70.97 51.00
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7. retro_amel_1357 72.63 59.67
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8. retro_amel_1432 82.39 52.67
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9. retro_amel_1446 71.70 69.33
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10. retro_amel_1497 70.45 57.33
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11. retro_amel_1634 72.43 61.33
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12. retro_amel_1817 65.03 53.33
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13. retro_amel_1857 72.45 64.33
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Download FASTA sequences of all ENSAMEG00000008962 retrocopies