RetrogeneDB ID: | retro_sara_421 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_19833:263..823(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPDL | ||
Ensembl ID: | ENSSARG00000009961 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037] |
Percent Identity: | 54.21 % |
Parental protein coverage: | 74.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NVDKVLELKEHKLDGKLTDPKRARALKVEGPLKKVFVGGLSPDTSEEQFKEYFGALGEIENIELPMDTKT |
.V.KVL..KEH.LD....DPK.A.A.K...P..KVFVGGL.P...EE...EYF...GEIE.IEL..D.K. | |
Retrocopy | SVEKVLD*KEHWLDIRVIDPKKAMAMKKD-PVRKVFVGGLNPEATEEKIREYFREFGEIEAIELSVDPKL |
Parental | NERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQ-QQKGGRGAAAGGRG-GTRGR |
N.RR.F.FIT...EEPVKK.LE...H.I...KCEIKVAQPKEVY.QQQ.....G..G...G.RG.G..G. | |
Retrocopy | NKRRVFVFITFKEEEPVKKVLEKKFHTISGSKCEIKVAQPKEVYQQQQY<RLGGRGGHNQGNRGSGGCGG |
Parental | GRGQGQNWNQGFNNYYDQGYG---NYNSAYGGDQNYSGYGGYDYT-GYNY |
G.GQ.Q.WNQG......QGYG....Y...YGG...YS.YG.Y.Y..GY.Y | |
Retrocopy | GGGQSQSWNQG*GSPWNQGYGYQQGYRPGYGG-YDYSPYGYYGYSPGYDY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014804 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000000160 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003275 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000015619 | 5 retrocopies | |
Equus caballus | ENSECAG00000022692 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001445 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000014452 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014753 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013805 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002501 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007178 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000011543 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002270 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009961 | 1 retrocopy |
retro_sara_421 ,
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