Parental gene:

HNRNPDL, ENSECAG00000022692

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037]
Organism:Horse (Equus caballus)
Coordinates:3:54619893..54623619(+)


>ENSECAG00000022692
AAAATGTTTATTGGAGGCTTGAGCTGGGATACAAGCAAGAAAGATCTGACTGAGTATTTGTCTCGATTTGGGGAAGTTGT
AGACTGCACAATTAAAACAGATCCAGTCACGGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGATGCTGCTAGTG
TTGATAAGGTTTTGGAACTGAAAGAACACAAACTGGATGGCAAATTGATAGACCCCAAAAGGGCCAAAGCTTTAAAAGGG
AAGGAGCCCCCTAAAAAGGTTTTTGTGGGTGGATTGAGCCCAGATACTTCTGAAGAACAAATTAAAGAATATTTTGGAGC
CTTTGGAGAGATTGAAAATATTGAACTTCCCATGGATACAAAAACAAATGAAAGAAGAGGATTTTGTTTTATTACATATA
CAGACGAAGAGCCAGTAAAGAAATTGTTAGAAAGCAGATATCATCAAATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCA
CAGCCCAAAGAAGTATATAGGCAGCAACAGCAACAACAAAAAGGAGGACGAGGTGCTGCAGCTGGTGGACGAGGTGGTAC
TAGGGGTCGTGGCCGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACA
ATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCTATGGCGGCTATGATTATACTGGGTATAACTATGGGAACTATGGA
TATGGACAGGGATATGCAGACTACAGTGGCCAACAGAGCACTTACGGCAAGGCATCTCGAGGGGGTGGCAATCACCAAAA
CAATTACCAGCCATACTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 43 .95 RPM
SRP021940_embryo 218 .14 RPM
SRP021940_cerebellum 83 .77 RPM
SRP021940_testis 54 .10 RPM
SRP021940_placental_villous 77 .80 RPM
SRP021940_articular_cartilage 57 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014804 ortholog_one2one 2 retrogenes
retro_btau_1827, retro_btau_461,
Choloepus hoffmanni ENSCHOG00000000160 possible_ortholog 8 retrogenes
retro_chof_115, retro_chof_1470, retro_chof_2108, retro_chof_2370, retro_chof_533, retro_chof_59, retro_chof_741, retro_chof_890,
Choloepus hoffmanni ENSCHOG00000003275 possible_ortholog 2 retrogenes
retro_chof_1578, retro_chof_18,
Cavia porcellus ENSCPOG00000015619 ortholog_one2one 5 retrogenes
retro_cpor_1110, retro_cpor_1318, retro_cpor_264, retro_cpor_274, retro_cpor_567,
Equus caballus ENSECAG00000008676 other_paralog 1 retrogene
retro_ecab_74,
Microcebus murinus ENSMICG00000001445 ortholog_one2one 4 retrogenes
retro_mmur_1016, retro_mmur_1570, retro_mmur_1572, retro_mmur_557,
Myotis lucifugus ENSMLUG00000014452 ortholog_one2one 2 retrogenes
retro_mluc_1140, retro_mluc_1761,
Mustela putorius furo ENSMPUG00000014753 ortholog_one2one 2 retrogenes
retro_mputfur_1359, retro_mputfur_600,
Oryctolagus cuniculus ENSOCUG00000013805 ortholog_one2one 1 retrogene
retro_ocun_505,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Ochotona princeps ENSOPRG00000007178 ortholog_one2one 3 retrogenes
retro_opri_1075, retro_opri_623, retro_opri_703,
Procavia capensis ENSPCAG00000011543 ortholog_one2one 1 retrogene
retro_pcap_366,
Rattus norvegicus ENSRNOG00000002270 ortholog_one2one 1 retrogene
retro_rnor_1365,
Sorex araneus ENSSARG00000009961 ortholog_one2one 1 retrogene
retro_sara_421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_1082 62.50 70.22
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Download FASTA sequences of all ENSECAG00000022692 retrocopies