RetrogeneDB ID: | retro_cpor_567 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_2:12570279..12571125(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRPDL | ||
Ensembl ID: | ENSCPOG00000015619 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.72 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 3 |
Parental | GSKINASKNQQDDGYKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVD |
GSKINA.KNQ.DDG.KMFI.GLSWD.SKKDL.EYLS.F.E.VD.TIK..PVT.RSRGFGF.LFKDA.S.. | |
Retrocopy | GSKINANKNQ*DDG-KMFIAGLSWDISKKDLMEYLSQFEELVDYTIKINPVTRRSRGFGFLLFKDATSI- |
Parental | KVLELKEHKLD-GKLIDPKRAKALKGKEPPK-KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTN |
KVLEL.EHKL..GKLID.KRA.ALKGKEPPK.K.FV..LSPD.S.EQ.KEYF.A.G.I.NIELPM.T... | |
Retrocopy | KVLELEEHKLE<GKLIDSKRANALKGKEPPK<KLFVSRLSPDASKEQVKEYFEALG*IVNIELPMGT*VS |
Parental | ERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQ-QQQKGGRGAAAGGRGGTRGRGR |
ER.GFCFITYTDEEPVK.LLESRYHQIGSG.C.I.V.QPK.V..QQQ..Q.KGGRGAAAG...GTR..GR | |
Retrocopy | ERIGFCFITYTDEEPVKRLLESRYHQIGSGNCKIRVVQPKKVHWQQQ<EQRKGGRGAAAGR*RGTRSHGR |
Parental | GQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGG |
.QGQNW.QG.N.YYDQ...N.NSAYGG.QNY.GY..YD...YN.G...YG....D.SGQ.STY.K.S.GG | |
Retrocopy | AQGQNWTQGSNKYYDQRHRNHNSAYGGAQNYTGYFRYDCM-YN-GELWYG*ACSDCSGQ*STYRKTS*GG |
Parental | GNHQNNYQPY |
GNHQNNYQPY | |
Retrocopy | GNHQNNYQPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 105 .77 RPM |
SRP017611_kidney | 0 .00 RPM | 87 .00 RPM |
SRP017611_liver | 0 .00 RPM | 55 .10 RPM |
SRP040447_lung | 0 .00 RPM | 89 .38 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 57 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014804 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000000160 | 8 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003275 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000004251 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000015619 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000020972 | 1 retrocopy | |
Equus caballus | ENSECAG00000022692 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001445 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000014452 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000014753 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013805 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002501 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000007178 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000011543 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000002270 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009961 | 1 retrocopy |