RetrogeneDB ID: | retro_sscr_414 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:56646390..56646773(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000025544 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.06 % |
Parental protein coverage: | 93.48 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MGTNLPVKAEKHLLPERVWHHFEVAGDHVVVDGLRAEAPDDLVR-EAAYKIFLYPNAGQL-KCLEELLSN |
MG.N.P.K..KH.L..R....F...G.H..VD.L.AEAPDDL...E.A.K..LY.NAGQL.KCLEELL.. | |
Retrocopy | MGNNFP-KMDKHFLSVRICRNFILDGVHIIVDHLHAEAPDDLHE<EDA*KFVLYLNAGQL<KCLEELLNS |
Parental | RDLLAKLVGYESFSHRALQGTMARSPETVMQFLEKLSDKL-SERTMKDFEMMRGMKMKLNPQ |
RD..A.LVGY..F.H.ALQ.T.A...ETVM.FLEKLSDK..SE.T.K...M......KLN.Q | |
Retrocopy | RDFMANLVGYFTFCHKALQRT*AKISETVMRFLEKLSDKI>SEETIKGASMV*EITIKLNLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 3 .72 RPM |
SRP014902_testis | 0 .00 RPM | 6 .51 RPM |
SRP018288_heart | 0 .00 RPM | 6 .99 RPM |
SRP018288_kidney | 0 .00 RPM | 13 .50 RPM |
SRP018288_liver | 0 .00 RPM | 4 .96 RPM |
SRP018288_lung | 0 .00 RPM | 2 .34 RPM |
SRP018856_adipose | 0 .00 RPM | 5 .65 RPM |
SRP035408_brain | 0 .00 RPM | 3 .37 RPM |
SRP035408_liver | 0 .00 RPM | 7 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000027001 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009424 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006942 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013401 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005207 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025544 | 1 retrocopy |
retro_sscr_414 ,
|