RetrogeneDB ID: | retro_ggor_2619 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:110529107..110530203(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MIPEP | ||
Ensembl ID: | ENSGGOG00000009424 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.59 % |
Parental protein coverage: | 51.47 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NPQNSEVMPWDPPYYSGVIRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSED |
N.Q.S.VMPWDP.Y.SGVI.A.RYNI.P.LYC.FFSLGACMEGLNI.LN.LL.ISLYAE.P.KGEVW.ED | |
Retrocopy | NSQSSKVMPWDPRYQSGVIHAQRYNIDPGLYCLFFSLGACMEGLNIWLNKLLEISLYAE*PTKGEVWCED |
Parental | VRKLAVVHESEGLLGYIYCDFFQRADKP-HQDCHFTIRGGRLKEDGDYQLPVVVLMLNLPRSSRSSPTLL |
VRKLA..HESEGLLG.IY.DFFQ.ADKP.HQDCHF.I.GGRLKED.DYQLPV.VLMLNLP.SSRSS.TLL | |
Retrocopy | VRKLAIIHESEGLLGCIYFDFFQQADKP<HQDCHFPIHGGRLKEDRDYQLPVIVLMLNLPHSSRSSQTLL |
Parental | TPGMMENLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFANDYRVVNQFARHYQTGQPLPK |
TPGMMENL.HEMGHAMHSMLGRT.YQH.TGTRCP.DFA.VPSIL.EYFANDY.V..........G....K | |
Retrocopy | TPGMMENLDHEMGHAMHSMLGRTCYQHITGTRCPIDFAGVPSILIEYFANDY*VTS-LPDKIRMGIHCQK |
Parental | NMVSRLCESKKVCAAADMQLQVFYATLDQIYHGKHPLRNSTTDILKETQEKFYGLPYVPNTAWQLRFSHL |
NMVS.L.ESKKVCAAADM.LQVFYA..DQIYH.KHPLRNSTTDILKETQE.F.GLPYVPNTAW.L....L | |
Retrocopy | NMVSQLSESKKVCAAADMKLQVFYAPQDQIYHRKHPLRNSTTDILKETQETFCGLPYVPNTAWKLWITYL |
Parental | VGYGAKYYSYLMSRAVASMVWKECFLQDPFNRAAG-ERYRREMLAHGGGREPMLMVEGMLQKCPSVDDFV |
.GY..KYYSYLMSRAV.SMVWKECFLQ.PFNRA...E.Y.REMLAH.GG..PMLMVEG.LQKCPS.D.FV | |
Retrocopy | MGYRTKYYSYLMSRAVTSMVWKECFLQNPFNRATW<ECYCREMLAHSGGKKPMLMVEGVLQKCPSIDYFV |
Parental | SALVSDLDLDFETFLMDSE |
SALVSDLDLDFETF.MDSE | |
Retrocopy | SALVSDLDLDFETFVMDSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .76 RPM |
SRP007412_cerebellum | 0 .00 RPM | 5 .08 RPM |
SRP007412_heart | 0 .00 RPM | 14 .98 RPM |
SRP007412_kidney | 0 .00 RPM | 27 .19 RPM |
SRP007412_liver | 0 .00 RPM | 9 .79 RPM |
SRP007412_testis | 0 .00 RPM | 21 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3891 |
Pongo abelii | retro_pabe_3172 |
Macaca mulatta | retro_mmul_1732 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000027001 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009424 | 1 retrocopy |
retro_ggor_2619 ,
|
Macaca mulatta | ENSMMUG00000006942 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013401 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005207 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009290 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025544 | 1 retrocopy |