RetrogeneDB ID:

retro_ggor_2619

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:110529107..110530203(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MIPEP
Ensembl ID:ENSGGOG00000009424
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2619
AATTCTCAAAGTTCCAAAGTAATGCCTTGGGACCCCCGCTACCAGAGTGGTGTGATTCATGCACAAAGGTATAATATTGA
CCCTGGCTTATATTGCCTGTTTTTCTCCCTTGGAGCATGCATGGAAGGCCTGAATATTTGGCTTAACAAACTGTTGGAGA
TTTCCTTATATGCAGAGTAGCCTACAAAAGGAGAGGTATGGTGTGAAGATGTCCGAAAACTGGCCATCATTCATGAATCT
GAAGGACTGTTGGGGTGCATTTACTTCGATTTTTTTCAGCAAGCAGACAAACCCATCAGGATTGCCATTTTCCAATCCAC
GGAGGCAGATTAAAGGAAGACAGAGACTATCAACTCCCAGTCATAGTTCTTATGCTGAATCTTCCCCATTCCTCAAGGAG
TTCACAAACTTTGCTAACTCCTGGAATGATGGAAAATCTTGACCATGAAATGGGACATGCTATGCATTCAATGCTAGGAC
GTACTTGTTACCAACACATCACCGGAACCAGGTGCCCCATTGATTTTGCAGGGGTTCCTTCTATTCTAATAGAGTACTTT
GCAAATGATTATTGAGTAACCAGTTTGCCAGACAAAATTAGAATGGGCATCCACTGCCAAAAAAATATGGTGTCTCAGCT
TTCTGAATCTAAAAAGGTTTGTGCTGCAGCTGATATGAAACTTCAGGTCTTTTATGCCCCTCAGGATCAAATCTACCATA
GGAAGCATCCCCTGAGGAATTCAACCACAGACATTCTCAAGGAAACACAAGAGACATTCTGTGGCTTACCATATGTTCCA
AATACTGCCTGGAAGCTGTGGATCACCTACCTCATGGGCTATAGGACCAAATATTACTCTTACCTCATGTCTAGGGCAGT
CACTTCCATGGTTTGGAAGGAATGTTTTCTACAAAATCCTTTTAACAGGGCCACATGGAGTGCTATTGCAGGGAGATGCT
GGCCCACAGTGGAGGCAAGAAGCCCATGCTCATGGTTGAAGGTGTGCTTCAAAAGTGCCCTTCTATTGATTACTTTGTAA
GTGCCCTTGTTTCTGACTTGGATCTGGACTTTGAAACTTTTGTCATGGATTCTGAA

ORF - retro_ggor_2619 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 78.59 %
Parental protein coverage: 51.47 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalNPQNSEVMPWDPPYYSGVIRAERYNIEPSLYCPFFSLGACMEGLNILLNRLLGISLYAEQPAKGEVWSED
N.Q.S.VMPWDP.Y.SGVI.A.RYNI.P.LYC.FFSLGACMEGLNI.LN.LL.ISLYAE.P.KGEVW.ED
RetrocopyNSQSSKVMPWDPRYQSGVIHAQRYNIDPGLYCLFFSLGACMEGLNIWLNKLLEISLYAE*PTKGEVWCED
ParentalVRKLAVVHESEGLLGYIYCDFFQRADKP-HQDCHFTIRGGRLKEDGDYQLPVVVLMLNLPRSSRSSPTLL
VRKLA..HESEGLLG.IY.DFFQ.ADKP.HQDCHF.I.GGRLKED.DYQLPV.VLMLNLP.SSRSS.TLL
RetrocopyVRKLAIIHESEGLLGCIYFDFFQQADKP<HQDCHFPIHGGRLKEDRDYQLPVIVLMLNLPHSSRSSQTLL
ParentalTPGMMENLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFANDYRVVNQFARHYQTGQPLPK
TPGMMENL.HEMGHAMHSMLGRT.YQH.TGTRCP.DFA.VPSIL.EYFANDY.V..........G....K
RetrocopyTPGMMENLDHEMGHAMHSMLGRTCYQHITGTRCPIDFAGVPSILIEYFANDY*VTS-LPDKIRMGIHCQK
ParentalNMVSRLCESKKVCAAADMQLQVFYATLDQIYHGKHPLRNSTTDILKETQEKFYGLPYVPNTAWQLRFSHL
NMVS.L.ESKKVCAAADM.LQVFYA..DQIYH.KHPLRNSTTDILKETQE.F.GLPYVPNTAW.L....L
RetrocopyNMVSQLSESKKVCAAADMKLQVFYAPQDQIYHRKHPLRNSTTDILKETQETFCGLPYVPNTAWKLWITYL
ParentalVGYGAKYYSYLMSRAVASMVWKECFLQDPFNRAAG-ERYRREMLAHGGGREPMLMVEGMLQKCPSVDDFV
.GY..KYYSYLMSRAV.SMVWKECFLQ.PFNRA...E.Y.REMLAH.GG..PMLMVEG.LQKCPS.D.FV
RetrocopyMGYRTKYYSYLMSRAVTSMVWKECFLQNPFNRATW<ECYCREMLAHSGGKKPMLMVEGVLQKCPSIDYFV
ParentalSALVSDLDLDFETFLMDSE
SALVSDLDLDFETF.MDSE
RetrocopySALVSDLDLDFETFVMDSE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 6 .76 RPM
SRP007412_cerebellum 0 .00 RPM 5 .08 RPM
SRP007412_heart 0 .00 RPM 14 .98 RPM
SRP007412_kidney 0 .00 RPM 27 .19 RPM
SRP007412_liver 0 .00 RPM 9 .79 RPM
SRP007412_testis 0 .00 RPM 21 .55 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2619 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2619 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3891
Pongo abelii retro_pabe_3172
Macaca mulatta retro_mmul_1732

Parental genes homology:
Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000000270011 retrocopy
Gorilla gorilla ENSGGOG00000009424 1 retrocopy
retro_ggor_2619 ,
Macaca mulatta ENSMMUG000000069421 retrocopy
Nomascus leucogenys ENSNLEG000000134011 retrocopy
Pongo abelii ENSPPYG000000052071 retrocopy
Sus scrofa ENSSSCG000000092901 retrocopy
Sus scrofa ENSSSCG000000255441 retrocopy



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