RetrogeneDB ID: | retro_sscr_415 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:56647182..56647740(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000009290 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.21 % |
Parental protein coverage: | 77.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | NLFHEMGHAMHSMLGRTRYQHVTGTRCPTDFAEVPSILMEYFAADYRVVQQFARHYQTG-QSLPRSMVSR |
NL.HEM.H..HSMLG.T.YQHV..TR.PTDFAEV..I..EYF...Y.V..QFARH.QTG.......M... | |
Retrocopy | NLLHEMEHTVHSMLGCTYYQHVNWTRYPTDFAEVSFIPLEYFVNYYLVINQFARHHQTG<EAMLKDMY-H |
Parental | LCESKKVCAAADMQLQVFYAALDQLYHGPHPRGRCTTDVLRATQERFYGLPYVPGTAW-QLRFSHLVGYG |
LC..KK.CA..D.QLQ.FYA.LD.L....HP..R.T.D.LR..Q...YGLP....TA...L.FSHLVG.G | |
Retrocopy | LCGFKKTCAEVDRQLQLFYATLDCL-PWKHPLRRSTPDILREVQSKVYGLPNITNTAH<LL*FSHLVGHG |
Parental | AKYYSYLMSRAVASMVWRECFLQDPFNR-AAGERYRREMLAHGGGKEPLLMV |
AKYYSYL.SR...SMVW.E..LQ.P.NR.A.G......ML.H...KEP..M. | |
Retrocopy | AKYYSYLVSRTLTSMVWKEGILQNPNNR<ATGKYHYMGMLSHVKSKEPIFMI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 22 .56 RPM |
SRP014902_testis | 0 .00 RPM | 30 .27 RPM |
SRP018288_heart | 0 .00 RPM | 14 .96 RPM |
SRP018288_kidney | 0 .00 RPM | 21 .57 RPM |
SRP018288_liver | 0 .00 RPM | 7 .84 RPM |
SRP018288_lung | 0 .00 RPM | 11 .51 RPM |
SRP018856_adipose | 0 .00 RPM | 13 .69 RPM |
SRP035408_brain | 0 .00 RPM | 8 .70 RPM |
SRP035408_liver | 0 .00 RPM | 12 .42 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000027001 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009424 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006942 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013401 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005207 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009290 | 1 retrocopy |
retro_sscr_415 ,
|