>retro_sscr_661
CCTCAGAAACAGTTTGTGGCTGGAGAAGGAGTGAACAGTCGAGTTAGTGCACTGAATGGCTCAAAAGGAAAAGACTGTGA
AATTCCTGTACCTGTGGGTATTTCAATAACTGATGAAAATGGTAAAATTATAGGAGAATTCAATAAAGAGAAAGACAGAA
TTCTAGTAGCTGAAGAAAGTCTTGGTGGTAAATTACTTACAAATTTCTTACCATTGAAAGGCCAGAAACAAGTAATTCAC
CTTGATCTAAAACTTATAGCTGATATATACCTAGTGTGATTCCCAAATGCTGGAAAATCCTCTTTGCTAAGTAAAATTTC
TCATGCAAAACCTGTGAATGCAGATTATGCATTTTCAACATGAAAACCTGAACTTCAAAAAATTAAGTATCATGGTTTCA
AAGAGATACCAATAGCTGATCTTCCTGGTTTAATAGAAGGAACACATATGAACAAAGGAATGGGCCACAAAGTCCTCAGG
CATATAGAAAGAACTAAATAATTACTTTTTGTTGTTGGTATTTCTGGATTTCAGCTTTCTTTCCAAACTCAATATAGAAC
TGCCTTCGAAACTGTAATACTACTCACAAAAGAGTTGGAGTTGCCCAAAGAGGAACTTCAGACAAAACCTGATGTCCTAG
CAGTTAATAAAATGGACTTGACAGATGCCCAAGATAAATTTCAAGTACTGATGAACTAACTCCAAAATCCTAAAGACTGT
TTACATTTA
ORF - retro_sscr_661 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.61 % |
Parental protein coverage: |
62.89 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | PQKRFVAGEGANSRVSALKGSKGKDCEIPVPVGISVTDENGKIIGELNKEKDRILVAEGGIGGKLLTNFL |
| PQK.FVAGEG.NSRVSAL.GSKGKDCEIPVPVGIS.TDENGKIIGE.NKEKDRILVAE...GGKLLTNFL |
Retrocopy | PQKQFVAGEGVNSRVSALNGSKGKDCEIPVPVGISITDENGKIIGEFNKEKDRILVAEESLGGKLLTNFL |
|
Parental | PLKGQRRVIHLDLKLIADVGLVGFPNAGKSSLLSKISHAKPAIADYAFTTLKPELGKIMYNDFKQISVAD |
| PLKGQ..VIHLDLKLIAD..LV.FPNAGKSSLLSKISHAKP..ADYAF.T.KPEL.KI.Y..FK.I..AD |
Retrocopy | PLKGQKQVIHLDLKLIADIYLV*FPNAGKSSLLSKISHAKPVNADYAFST*KPELQKIKYHGFKEIPIAD |
|
Parental | LPGLIEGAHMNKGMGHKFLKHIERTKQLLFVVDISGFQLSSQTRYRTAFETIILLTKKELELYKEELQTK |
| LPGLIEG.HMNKGMGHK.L.HIERTK.LLFVV.ISGFQLS.QT.YRTAFET.ILLT.KELEL.KEELQTK |
Retrocopy | LPGLIEGTHMNKGMGHKVLRHIERTK*LLFVVGISGFQLSFQTQYRTAFETVILLT-KELELPKEELQTK |
|
Parental | PALLAVNKMDLPDAQDKFQVLMNQLQSPKDFLHL |
| P..LAVNKMDL.DAQDKFQVLMN.LQ.PKD.LHL |
Retrocopy | PDVLAVNKMDLTDAQDKFQVLMN*LQNPKDCLHL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP014902_placenta |
0 .00 RPM |
1 .19 RPM |
SRP014902_testis |
0 .00 RPM |
9 .48 RPM |
SRP018288_heart |
0 .03 RPM |
17 .26 RPM |
SRP018288_kidney |
0 .00 RPM |
18 .62 RPM |
SRP018288_liver |
0 .00 RPM |
9 .59 RPM |
SRP018288_lung |
0 .00 RPM |
12 .83 RPM |
SRP018856_adipose |
0 .00 RPM |
12 .63 RPM |
SRP035408_brain |
0 .00 RPM |
20 .68 RPM |
SRP035408_liver |
0 .00 RPM |
14 .71 RPM |
Sus scrofa was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_sscr_661 retrocopy.
Sus scrofa was not studied using FANTOM5 data.
retro_sscr_661 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_sscr_661 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.