RetrogeneDB ID: | retro_tbel_1636 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_533:308752..309106(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4H | ||
Ensembl ID: | ENSTBEG00000009558 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4H [Source:HGNC Symbol;Acc:12741] |
Percent Identity: | 87.29 % |
Parental protein coverage: | 55.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFD |
S.GSAG..G.RSQKELPTEP.YTAYVGNLPFNTVQGDIDAIFK.LSIRSVRLVRDKDTD..KGFC.VEFD | |
Retrocopy | SCGSAGDQGFRSQKELPTEPSYTAYVGNLPFNTVQGDIDAIFKGLSIRSVRLVRDKDTDQLKGFC*VEFD |
Parental | EVDSLKEALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGM |
EVD.LKEALT.DGALLGDRSLR.DIAEGRKQDKGG.GFRKGGP.DRG. | |
Retrocopy | EVDALKEALTHDGALLGDRSLRADIAEGRKQDKGGSGFRKGGPEDRGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002525 | 2 retrocopies | |
Felis catus | ENSFCAG00000029386 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005284 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006205 | 2 retrocopies | |
Mus musculus | ENSMUSG00000040731 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017685 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028051 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017489 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019287 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001454 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005423 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000009558 | 2 retrocopies |
retro_tbel_1636 , retro_tbel_2470,
|