RetrogeneDB ID: | retro_fcat_580 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:149294814..149295207(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000024316 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4H | ||
Ensembl ID: | ENSFCAG00000029386 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4H [Source:HGNC Symbol;Acc:12741] |
Percent Identity: | 73.19 % |
Parental protein coverage: | 54.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VIYSPWWGGGSESRSRGSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDK |
V....W.G.G....S.GSA.GHGS.SQKE.PTEP.YTAYVGNLPFNTVQGD.DAIFKDLSIRSV.LVRDK | |
Retrocopy | VLQQLWHGRG----SCGSAYGHGSHSQKEMPTEPRYTAYVGNLPFNTVQGDTDAIFKDLSIRSVLLVRDK |
Parental | DTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGMGGSRES |
.TDKF...CYVEFDEVDS..E.LT.DGA.LGD.SLR.DIAE..KQDK.GFGFRKGGPDDRG...S... | |
Retrocopy | NTDKF---CYVEFDEVDSHNEGLTHDGAWLGDQSLRADIAEDTKQDKSGFGFRKGGPDDRGCARSEDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 58 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 40 .91 RPM |
SRP017611_liver | 0 .00 RPM | 25 .58 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002525 | 2 retrocopies | |
Felis catus | ENSFCAG00000029386 | 1 retrocopy |
retro_fcat_580 ,
|
Gorilla gorilla | ENSGGOG00000005284 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006205 | 2 retrocopies | |
Mus musculus | ENSMUSG00000040731 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017685 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028051 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017489 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000019287 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001454 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009558 | 2 retrocopies |