RetrogeneDB ID: | retro_tsyr_1089 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_30277:15648..15971(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | APOO | ||
Ensembl ID: | ENSTSYG00000010239 | ||
Aliases: | None | ||
Description: | apolipoprotein O [Source:HGNC Symbol;Acc:28727] |
Percent Identity: | 70.64 % |
Parental protein coverage: | 54.55 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | CQETYSQTKPKMQSLVQWGLDSYEYLQNAPPGFFPRLGVIGFAGLVGLLLARGS-KIKKLVYPPGFMGLA |
CQET.SQT.PKM.SLVQWGLDS.E.LQN..PGFFP.LGVIGF.GL.G..L.R.S.KI.K.VY.PGF.GLA | |
Retrocopy | CQETHSQTRPKM*SLVQWGLDSNE*LQNVLPGFFPGLGVIGFSGLTGHFLTRSS<KIRKPVYLPGFLGLA |
Parental | ASLYYPQQAISFAQVSGERLYDWGLRGYIVMEDLWKENF |
A...YP.Q.I..AQVS.ERL.DWGL.GYIV...LWKENF | |
Retrocopy | ALICYP*QVIESAQVSKERLHDWGL*GYIVIKHLWKENF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |