RetrogeneDB ID: | retro_fcat_1203 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:93367367..93367971(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | APOO | ||
Ensembl ID: | ENSFCAG00000000029 | ||
Aliases: | None | ||
Description: | apolipoprotein O [Source:HGNC Symbol;Acc:28727] |
Percent Identity: | 76.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | VFQVIQRSVGPASL-SLLTFKVYASPKKDSPHKTSVKVNELSLYSVPESPSKYVDEP-RTQLEESISHIR |
.F.VIQ.SVGPASL.S..T.KVYASP.KDS.HKT..KV.ELSLYS..E..SKYV.EP.RT.LEESISH.. | |
Retrocopy | MFKVIQSSVGPASL>SVHTVKVYASPNKDSLHKTAMKVKELSLYSISEGRSKYVEEP>RTHLEESISHL* |
Parental | HYCEPYTSWCQEMYSQTKPKMQSLVQWGL---DSYEYLQNAPPGFFPRLGVIGFAGVLGLLLARGSKIKK |
HY.EPY..WCQEMYSQTKPKMQSLVQ.GL...D.Y.YL.NAPPGFFPRLGVIG.AG...LLLARGSKIKK | |
Retrocopy | HYGEPYSRWCQEMYSQTKPKMQSLVQ*GLDTPDRYKYLPNAPPGFFPRLGVIGCAGIV*LLLARGSKIKK |
Parental | LVYPPGFMGLAASLYYPQQAIVFVQVSGEKLYDWGLRGYIVVEDLWK-ENFQKPGNVKNSPGNK |
.VYPPGFMGLAAS.YYPQQAIVFVQ.SG.KLYDW.L.GYIV.E.LW...NFQK.GNVKNSPGNK | |
Retrocopy | PVYPPGFMGLAASFYYPQQAIVFVQGSGKKLYDWDLQGYIVTENLWR<VNFQKTGNVKNSPGNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .44 RPM |
SRP017611_liver | 0 .00 RPM | 6 .77 RPM |