RetrogeneDB ID: | retro_tsyr_1608 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_51027:8014..8758(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBBP7 | ||
Ensembl ID: | ENSTSYG00000002385 | ||
Aliases: | None | ||
Description: | retinoblastoma binding protein 7 [Source:HGNC Symbol;Acc:9890] |
Percent Identity: | 79.03 % |
Parental protein coverage: | 52.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VTKPEGKDYALHWLVLGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKIN |
VT.PEGKD...H.LV.G..T.DEQ.HLV.A.V..PNDDAQFDASH.DS.KGEF.GFGSV.GKIE.EIK.N | |
Retrocopy | VTRPEGKDFSIHRLVVGGNTWDEQQHLVIASVQLPNDDAQFDASHYDSQKGEF*GFGSVSGKIEIEIKVN |
Parental | HEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGH |
HEGEVNRARY..QNP.IIATKTPSS.VLVFDYTK.P.K.DPSGECN.DL.L.GHQKEGYGLSWN.NLSGH | |
Retrocopy | HEGEVNRARYVLQNPCIIATKTPSSVVLVFDYTKYPSKLDPSGECNQDLALCGHQKEGYGLSWNPNLSGH |
Parental | LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTT |
LLSASDDH..CLWD..A.PKEGK.VDAK.IFTGH..VVEDV..HLLH.SLFGSVADDQK.MIWDT.S..T | |
Retrocopy | LLSASDDHSICLWDLSAVPKEGKVVDAKTIFTGHTTVVEDVSRHLLHQSLFGSVADDQKFMIWDTCSKDT |
Parental | SKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL |
SKPSH.VDAHTA.VN.LSFNPYSEFILATGSADK.VA. | |
Retrocopy | SKPSHSVDAHTADVNYLSFNPYSEFILATGSADKSVAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002820 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031353 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000683 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014995 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000007189 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000021702 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000005157 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008079 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000010151 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002385 | 4 retrocopies |